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1O3L
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
ELABORATE MANIFOLD OF SHORT HYDROGEN BOND ARRAYS MEDIATING BINDING OF ACTIVE SITE-DIRECTED SERINE PROTEASE INHIBITORS
Authors
:
B. A. Katz, K. Elrod, E. Verner, R. L. Mackman, C. Luong, W. D. Shrader, M. Sendzik, J. R. Spencer, P. A. Sprengeler, A. Kolesnikov, V. W. Tai, H. C. Hui, J. G. Breitenbucher, D. Allen, J. W. Janc
Date
:
06 Mar 03 (Deposition) - 02 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Serine Protease, Short Hydrogen Bond, Inhibition Mechanism, Shift Of Pka, Trypsin, Thrombin, Urokinase, Factor Xa, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Katz, K. Elrod, E. Verner, R. L. Mackman, C. Luong, W. D. Shrader, M. Sendzik, J. R. Spencer, P. A. Sprengeler, A. Kolesnikov, V. W. Tai, H. C. Hui, J. G. Breitenbucher, D. Allen, J. W. Janc
Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating Binding Of Active Site-Directed Serine Protease Inhibitors.
J. Mol. Biol. V. 329 93 2003
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: (3-{5-[AMINO(IMINIO)METHYL]-1H-IND... (678a)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
678
1
Ligand/Ion
(3-{5-[AMINO(IMINIO)METHYL]-1H-INDOL-2-YL}-5-BROMO-4-OXIDOPHENYL)ACETATE
2
CA
1
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:70 , ASN A:72 , VAL A:75 , GLU A:80 , HOH A:248 , HOH A:560
BINDING SITE FOR RESIDUE CA A 247
2
AC2
SOFTWARE
GLY A:174 , GLN A:240
BINDING SITE FOR RESIDUE CL A 260
3
AC3
SOFTWARE
HIS A:57 , ASP A:189 , SER A:190 , GLN A:192 , SER A:195 , SER A:214 , GLY A:216 , GLY A:219 , GLY A:226 , HOH A:383
BINDING SITE FOR RESIDUE 678 A 246
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243)
2: TRYPSIN_HIS (A:53-58)
3: TRYPSIN_SER (A:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
TRY1_BOVIN
24-244
1
A:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
TRY1_BOVIN
59-64
1
A:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
TRY1_BOVIN
194-205
1
A:189-200
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Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:16-63 (gaps))
Exon 1.3 (A:63-151 (gaps))
Exon 1.4 (A:151-194)
Exon 1.5 (A:195-245 (gaps))
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000033479
1
ENSBTAE00000401279
chr4:
109299627-109299547
81
TRY1_BOVIN
1-16
16
0
-
-
1.2
ENSBTAT00000033479
2
ENSBTAE00000397626
chr4:
109298170-109298011
160
TRY1_BOVIN
16-69
54
1
A:16-63 (gaps)
48
1.3
ENSBTAT00000033479
3
ENSBTAE00000409037
chr4:
109297593-109297340
254
TRY1_BOVIN
69-154
86
1
A:63-151 (gaps)
90
1.4
ENSBTAT00000033479
4
ENSBTAE00000386782
chr4:
109296654-109296518
137
TRY1_BOVIN
154-199
46
1
A:151-194
46
1.5
ENSBTAT00000033479
5
ENSBTAE00000422174
chr4:
109295990-109295749
242
TRY1_BOVIN
200-248
49
1
A:195-245 (gaps)
52
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1o3la_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Trypsin(ogen)
(500)
Cow (Bos taurus) [TaxId: 9913]
(392)
1a
d1o3la_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1o3lA01 (A:16-27,A:121-232)
1b: CATH_1o3lA02 (A:28-120,A:233-245)
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)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Cattle (Bos taurus)
(308)
1a
1o3lA01
A:16-27,A:121-232
1b
1o3lA02
A:28-120,A:233-245
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Trypsin_1o3lA01 (A:16-238)
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Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Bos taurus (Bovine)
(190)
1a
Trypsin-1o3lA01
A:16-238
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Chain A
Asymmetric Unit 1
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Asym.Unit (82 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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