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1O0V
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF IGE FC REVEALS AN ASYMMETRICALLY BENT CONFORMATION
Authors
:
T. Wan, R. L. Beavil, S. M. Fabiane, A. J. Beavil, M. K. Sohi, M. Keown, R. J A. J. Henry, R. J. Owens, H. J. Gould, B. J. Sutton
Date
:
06 Sep 02 (Deposition) - 18 Sep 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ige Fc, Immunoglobulin E, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Wan, R. L. Beavil, S. M. Fabiane, A. J. Beavil, M. K. Sohi, M. Keown, R. J. Young, A. J. Henry, R. J. Owens, H. J. Gould, B. J. Sutton
The Crystal Structure Of Ige Fc Reveals An Asymmetrically Bent Conformation
Nat. Immunol. V. 3 681 2002
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: AD1 (SOFTWARE)
10: AD2 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:2 , ASP A:362 , GLN A:392 , ASN A:394
BINDING SITE FOR RESIDUE NAG A 1
02
AC2
SOFTWARE
NAG A:1 , BMA A:3 , TYR A:339 , LEU A:359 , THR A:398
BINDING SITE FOR RESIDUE NAG A 2
03
AC4
SOFTWARE
NAG A:2 , MAN A:4 , MAN A:5 , TYR A:339
BINDING SITE FOR RESIDUE BMA A 3
04
AC5
SOFTWARE
BMA A:3 , MAN A:6 , MAN A:7
BINDING SITE FOR RESIDUE MAN A 4
05
AC6
SOFTWARE
BMA A:3 , ARG B:308
BINDING SITE FOR RESIDUE MAN A 5
06
AC7
SOFTWARE
MAN A:4 , GLN A:494 , HOH A:1030 , ARG B:496
BINDING SITE FOR RESIDUE MAN A 6
07
AC8
SOFTWARE
MAN A:4 , SER A:341 , ARG A:342 , THR A:355 , ILE A:356 , THR A:357 , GOL A:1001
BINDING SITE FOR RESIDUE MAN A 7
08
AC9
SOFTWARE
NAG B:2 , ARG B:334 , VAL B:361 , ASP B:362 , GLN B:392 , ASN B:394 , THR B:396 , HOH B:634
BINDING SITE FOR RESIDUE NAG B 1
09
AD1
SOFTWARE
NAG B:1 , BMA B:3 , SER B:337 , TYR B:339 , LEU B:359 , VAL B:361 , THR B:398
BINDING SITE FOR RESIDUE NAG B 2
10
AD2
SOFTWARE
NAG B:2 , MAN B:4 , MAN B:5
BINDING SITE FOR RESIDUE BMA B 3
11
BC2
SOFTWARE
BMA B:3 , MAN B:6 , BMA B:7 , SER B:341 , HOH B:643
BINDING SITE FOR RESIDUE MAN B 4
12
BC3
SOFTWARE
BMA B:3
BINDING SITE FOR RESIDUE MAN B 5
13
BC4
SOFTWARE
MAN B:4 , GLN B:494 , HOH B:658
BINDING SITE FOR RESIDUE MAN B 6
14
BC5
SOFTWARE
MAN B:4 , ARG B:342 , SER B:344 , HOH B:578 , HOH B:644 , HOH B:645
BINDING SITE FOR RESIDUE BMA B 7
15
BC6
SOFTWARE
GLY A:243 , ARG B:393
BINDING SITE FOR RESIDUE SO4 A 1011
16
BC7
SOFTWARE
ARG A:419 , ALA A:442 , GLY B:244 , HIS B:246
BINDING SITE FOR RESIDUE SO4 A 1012
17
BC8
SOFTWARE
GLY A:406 , THR A:407 , ARG A:408
BINDING SITE FOR RESIDUE SO4 A 1013
18
BC9
SOFTWARE
THR A:493 , GLN A:494 , ARG A:496 , ARG B:496
BINDING SITE FOR RESIDUE SO4 A 1014
19
CC1
SOFTWARE
MAN A:7 , SER A:344 , ILE A:474 , SER A:475
BINDING SITE FOR RESIDUE GOL A 1001
20
CC2
SOFTWARE
THR A:450 , PRO A:451 , GLU A:452 , TRP A:453 , SER A:456 , LYS A:459 , ARG A:460 , TYR B:446
BINDING SITE FOR RESIDUE GOL A 1002
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003885 (W478L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003885
W
359
L
IGHE_HUMAN
Polymorphism
---
A/B
W
478
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|A:416-422,B:416-422|A:522-528,B:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHE_HUMAN
83-89
297-303
403-409
4
-
A:416-422
B:416-422
A:522-528
B:522-528
[
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Exons
(3, 6)
Info
All Exons
Exon 1.2 (A:228-330 | B:228-330)
Exon 1.3 (A:330-438 | B:330-438)
Exon 1.4 (A:438-545 | B:438-546)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000390541
1
ENSE00001935719
chr14:
106068065-106067756
310
IGHE_HUMAN
1-104
104
0
-
-
1.2
ENST00000390541
2
ENSE00001508179
chr14:
106067548-106067228
321
IGHE_HUMAN
104-211
108
2
A:228-330
B:228-330
104
104
1.3
ENST00000390541
3
ENSE00001508174
chr14:
106067141-106066818
324
IGHE_HUMAN
211-319
109
2
A:330-438
B:330-438
109
109
1.4
ENST00000390541
4
ENSE00001943927
chr14:
106066734-106066278
457
IGHE_HUMAN
319-428
110
2
A:438-545
B:438-546
108
109
[
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]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1o0va1 (A:228-330)
1b: SCOP_d1o0vb1 (B:228-330)
2a: SCOP_d1o0va2 (A:331-438)
2b: SCOP_d1o0vb2 (B:331-438)
3a: SCOP_d1o0va3 (A:439-545)
3b: SCOP_d1o0vb3 (B:439-546)
View:
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1o0va1
A:228-330
1b
d1o0vb1
B:228-330
Protein domain
:
Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1o0va2
A:331-438
2b
d1o0vb2
B:331-438
Protein domain
:
Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d1o0va3
A:439-545
3b
d1o0vb3
B:439-546
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1o0vB03 (B:436-545)
1b: CATH_1o0vA03 (A:436-545)
1c: CATH_1o0vA02 (A:329-435)
1d: CATH_1o0vB02 (B:329-435)
1e: CATH_1o0vA01 (A:228-328)
1f: CATH_1o0vB01 (B:228-328)
View:
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Classes
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)
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)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1o0vB03
B:436-545
1b
1o0vA03
A:436-545
1c
1o0vA02
A:329-435
1d
1o0vB02
B:329-435
1e
1o0vA01
A:228-328
1f
1o0vB01
B:228-328
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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