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Asym. Unit
Info
Asym.Unit (79 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (213 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COLD ADAPTED ALKALINE PROTEASE FROM PSEUDOMONAS TAC II 18, CO-CRYSTALLIZED WITH 5 MM EDTA (5 DAYS)
Authors
:
S. Ravaud, P. Gouet, R. Haser, N. Aghajari
Date
:
24 Feb 03 (Deposition) - 15 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (3x)
Keywords
:
Beta Jelly Roll, Calcium And Zinc Dependent Alkaline Protease, Hydrolase
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Reference
:
S. Ravaud, P. Gouet, R. Haser, N. Aghajari
Probing The Role Of Divalent Metal Ions In A Bacterial Psychrophilic Metalloprotease: Binding Studies Of An Enzyme In The Crystalline State By X-Ray Crystallography.
J. Bacteriol. V. 185 4195 2003
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
2a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
7
Ligand/Ion
CALCIUM ION
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:49 , ASN A:51 , ASP A:53 , VAL A:55 , ASN A:57 , ASP A:114
BINDING SITE FOR RESIDUE CA A 700
2
AC2
SOFTWARE
ARG A:250 , ASP A:252 , THR A:254 , ASP A:282 , GLY A:284 , ASP A:287
BINDING SITE FOR RESIDUE CA A 701
3
AC3
SOFTWARE
GLY A:285 , ASP A:287 , THR A:324 , GLU A:326 , HOH A:1129
BINDING SITE FOR RESIDUE CA A 702
4
AC4
SOFTWARE
GLY A:331 , GLY A:333 , ASP A:335 , GLY A:348 , ALA A:350 , ASP A:353
BINDING SITE FOR RESIDUE CA A 703
5
AC5
SOFTWARE
GLY A:349 , GLY A:351 , ASP A:353 , GLY A:366 , THR A:368 , ASP A:371
BINDING SITE FOR RESIDUE CA A 704
6
AC6
SOFTWARE
ASN A:340 , ALA A:342 , ASN A:344 , GLY A:357 , GLY A:359 , ASP A:362
BINDING SITE FOR RESIDUE CA A 705
7
AC7
SOFTWARE
GLY A:358 , GLY A:360 , ASP A:362 , ASP A:380 , ASP A:387
BINDING SITE FOR RESIDUE CA A 706
8
AC8
SOFTWARE
ARG A:139 , TRP A:210 , SER A:211 , ASN A:214 , HOH A:1056 , HOH A:1118 , HOH A:1119
BINDING SITE FOR RESIDUE SO4 A 500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1o0ta1 (A:245-463)
2a: SCOP_d1o0ta2 (A:3-244)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded right-handed beta-helix
(140)
Superfamily
:
beta-Roll
(25)
Family
:
Serralysin-like metalloprotease, C-terminal domain
(24)
Protein domain
:
Metalloprotease
(24)
Pseudomonas sp., tac ii 18 [TaxId: 306]
(8)
1a
d1o0ta1
A:245-463
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Serralysin-like metalloprotease, catalytic (N-terminal) domain
(25)
Protein domain
:
Metalloprotease
(24)
Pseudomonas sp., tac ii 18 [TaxId: 306]
(8)
2a
d1o0ta2
A:3-244
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1o0tA02 (A:20-247)
2a: CATH_1o0tA01 (A:3-19,A:248-462)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
'tac ii 18' (Pseudomonas sp)
(6)
1a
1o0tA02
A:20-247
Class
:
Mainly Beta
(13760)
Architecture
:
2 Solenoid
(23)
Topology
:
Alkaline Protease, subunit P, domain 1
(23)
Homologous Superfamily
:
Alkaline Protease, subunit P, domain 1
(23)
'tac ii 18' (Pseudomonas sp)
(6)
2a
1o0tA01
A:3-19,A:248-462
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Pfam Domains
(3, 5)
Info
all PFAM domains
1a: PFAM_Reprolysin_2_1o0tA01 (A:78-223)
2a: PFAM_HemolysinCabind_1o0tA02 (A:356-373)
2b: PFAM_HemolysinCabind_1o0tA03 (A:356-373)
2c: PFAM_HemolysinCabind_1o0tA04 (A:356-373)
3a: PFAM_Peptidase_M10_C_1o0tA05 (A:245-463)
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Clans
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Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin_2
(7)
Pseudomonas sp. TAC II 18
(6)
1a
Reprolysin_2-1o0tA01
A:78-223
Clan
:
no clan defined [family: HemolysinCabind]
(16)
Family
:
HemolysinCabind
(16)
Pseudomonas sp. TAC II 18
(6)
2a
HemolysinCabind-1o0tA02
A:356-373
2b
HemolysinCabind-1o0tA03
A:356-373
2c
HemolysinCabind-1o0tA04
A:356-373
Clan
:
no clan defined [family: Peptidase_M10_C]
(10)
Family
:
Peptidase_M10_C
(10)
Pseudomonas sp. TAC II 18
(6)
3a
Peptidase_M10_C-1o0tA05
A:245-463
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Asymmetric Unit 1
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Asym.Unit (79 KB)
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Header - Biol.Unit 1
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