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Asym. Unit
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Asym.Unit (53 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
RIBONUCLEASE A IN COMPLEX WITH URIDINE-2'-PHOSPHATE
Authors
:
D. D. Leonidas, N. G. Oikonomakos, E. D. Chrysina, M. N. Kosmopoulou, M. Vlassi
Date
:
24 Feb 03 (Deposition) - 09 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Ribonuclease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. D. Leonidas, G. B. Chavali, N. G. Oikonomakos, E. D. Chrysina, M. N. Kosmopoulou, M. Vlassi, C. Frankling, K. R. Acharya
High-Resolution Crystal Structures Of Ribonuclease A Complexed With Adenylic And Uridylic Nucleotide Inhibitors. Implications For Structure-Based Design Of Ribonucleolytic Inhibitors
Protein Sci. V. 12 2559 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO... (U2Pa)
1b: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO... (U2Pb)
View:
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No.
Name
Count
Type
Full Name
1
U2P
2
Ligand/Ion
PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:11 , HIS A:12 , LYS A:41 , VAL A:43 , ASN A:44 , THR A:45 , HIS A:119 , PHE A:120 , ASP A:121 , HOH A:1125 , HOH A:1158 , HOH A:1194 , HOH A:1195 , HOH A:1295
BINDING SITE FOR RESIDUE U2P A 1101
2
AC2
SOFTWARE
GLN B:11 , HIS B:12 , LYS B:41 , VAL B:43 , ASN B:44 , THR B:45 , LYS B:66 , HIS B:119 , PHE B:120 , ASP B:121 , ALA B:122 , HOH B:1314 , HOH B:1315 , HOH B:1357 , HOH B:1361
BINDING SITE FOR RESIDUE U2P B 1201
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (A:40-46,B:40-46)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
RNAS1_BOVIN
66-72
2
A:40-46
B:40-46
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Exons
(1, 2)
Info
All Exons
Exon 1.2 (A:1-124 | B:1-124)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000011586
1
ENSBTAE00000400684
chr10:
25757929-25757973
45
RNAS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000011586
2
ENSBTAE00000093931
chr10:
25758709-25759510
802
RNAS1_BOVIN
1-159
159
2
A:1-124
B:1-124
124
124
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1o0ma_ (A:)
1b: SCOP_d1o0mb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
Ribonuclease A (also ribonuclease B, S)
(173)
Cow (Bos taurus) [TaxId: 9913]
(164)
1a
d1o0ma_
A:
1b
d1o0mb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1o0mA00 (A:1-124)
1b: CATH_1o0mB00 (B:1-124)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
P-30 Protein
(299)
Homologous Superfamily
:
P-30 Protein
(299)
Cattle (Bos taurus)
(152)
1a
1o0mA00
A:1-124
1b
1o0mB00
B:1-124
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RnaseA_1o0mB01 (B:1-121)
1b: PFAM_RnaseA_1o0mB02 (B:1-121)
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Clans
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(
)
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)
(
)
Clan
:
no clan defined [family: RnaseA]
(125)
Family
:
RnaseA
(125)
Bos taurus (Bovine)
(107)
1a
RnaseA-1o0mB01
B:1-121
1b
RnaseA-1o0mB02
B:1-121
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Show PDB file:
Asym.Unit (53 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Biol.Unit 2 (25 KB)
Header - Biol.Unit 2
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