PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1O04
Asym. Unit
Info
Asym.Unit (734 KB)
Biol.Unit 1 (366 KB)
Biol.Unit 2 (367 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CYS302SER MUTANT OF HUMAN MITOCHONDRIAL ALDEHYDE DEHYDROGENASE COMPLEXED WITH NAD+ AND MG2+
Authors
:
S. J. Perez-Miller, T. D. Hurley
Date
:
20 Feb 03 (Deposition) - 24 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.42
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Aldh, Nad, Nadh, Isomerization, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Perez-Miller, T. D. Hurley
Coenzyme Isomerization Is Integral To Catalysis In Aldehyde Dehydrogenase
Biochemistry V. 42 7100 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 74)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GUANIDINE (GAIa)
2b: GUANIDINE (GAIb)
2c: GUANIDINE (GAIc)
2d: GUANIDINE (GAId)
2e: GUANIDINE (GAIe)
2f: GUANIDINE (GAIf)
2g: GUANIDINE (GAIg)
2h: GUANIDINE (GAIh)
2i: GUANIDINE (GAIi)
2j: GUANIDINE (GAIj)
2k: GUANIDINE (GAIk)
2l: GUANIDINE (GAIl)
2m: GUANIDINE (GAIm)
2n: GUANIDINE (GAIn)
2o: GUANIDINE (GAIo)
2p: GUANIDINE (GAIp)
2q: GUANIDINE (GAIq)
2r: GUANIDINE (GAIr)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
5c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
5d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
5e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
5f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
5g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
5h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
5g: SODIUM ION (NAg)
5h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
32
Ligand/Ion
1,2-ETHANEDIOL
2
GAI
18
Ligand/Ion
GUANIDINE
3
MG
8
Ligand/Ion
MAGNESIUM ION
4
NA
8
Ligand/Ion
SODIUM ION
5
NAD
8
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(74, 74)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:39 , VAL A:40 , ASP A:109 , GLN A:196 , HOH A:7169
BINDING SITE FOR RESIDUE NA A 6601
02
AC2
SOFTWARE
THR B:39 , VAL B:40 , ASP B:109 , GLN B:196 , HOH B:7433
BINDING SITE FOR RESIDUE NA B 6602
03
AC3
SOFTWARE
THR C:39 , VAL C:40 , ASP C:109 , GLN C:196 , HOH C:7317
BINDING SITE FOR RESIDUE NA C 6603
04
AC4
SOFTWARE
THR D:39 , VAL D:40 , ASP D:109 , GLN D:196 , HOH D:7466
BINDING SITE FOR RESIDUE NA D 6604
05
AC5
SOFTWARE
THR E:39 , VAL E:40 , ASP E:109 , GLN E:196 , HOH E:3885
BINDING SITE FOR RESIDUE NA E 6605
06
AC6
SOFTWARE
THR F:39 , VAL F:40 , ASP F:109 , GLN F:196 , HOH F:2809
BINDING SITE FOR RESIDUE NA F 6606
07
AC7
SOFTWARE
THR G:39 , VAL G:40 , ASP G:109 , GLN G:196 , HOH G:3200
BINDING SITE FOR RESIDUE NA G 6607
08
AC8
SOFTWARE
THR H:39 , VAL H:40 , ASP H:109 , GLN H:196 , HOH H:4701
BINDING SITE FOR RESIDUE NA H 6608
09
AC9
SOFTWARE
NAD A:6501 , HOH A:7058 , HOH A:7059 , HOH A:7060 , HOH A:7062 , HOH A:7257
BINDING SITE FOR RESIDUE MG A 6701
10
BC1
SOFTWARE
NAD B:6502 , HOH B:7011 , HOH B:7013 , HOH B:7191 , HOH B:7194 , HOH B:7430
BINDING SITE FOR RESIDUE MG B 6702
11
BC2
SOFTWARE
NAD C:6503 , HOH C:7000 , HOH C:7220 , HOH C:7221 , HOH C:7223 , HOH C:7257
BINDING SITE FOR RESIDUE MG C 6703
12
BC3
SOFTWARE
NAD D:6504 , HOH D:7069 , HOH D:7070 , HOH D:7072 , HOH D:7447 , HOH D:7531
BINDING SITE FOR RESIDUE MG D 6704
13
BC4
SOFTWARE
HOH E:2627 , HOH E:2628 , HOH E:2631 , HOH E:2632 , HOH E:4785 , NAD E:6505
BINDING SITE FOR RESIDUE MG E 6705
14
BC5
SOFTWARE
HOH F:2813 , HOH F:2814 , HOH F:2815 , HOH F:2833 , HOH F:2834 , NAD F:6506
BINDING SITE FOR RESIDUE MG F 6706
15
BC6
SOFTWARE
HOH G:3209 , HOH G:3210 , HOH G:4359 , HOH G:4360 , HOH G:4361 , NAD G:6507
BINDING SITE FOR RESIDUE MG G 6707
16
BC7
SOFTWARE
HOH H:2227 , HOH H:2228 , HOH H:2230 , HOH H:2231 , HOH H:2235 , NAD H:6508
BINDING SITE FOR RESIDUE MG H 6708
17
BC8
SOFTWARE
ILE A:165 , ILE A:166 , PRO A:167 , TRP A:168 , ASN A:169 , LYS A:192 , GLU A:195 , GLY A:225 , GLY A:229 , ALA A:230 , PHE A:243 , THR A:244 , GLY A:245 , SER A:246 , ILE A:249 , ILE A:253 , GLU A:268 , LEU A:269 , GLY A:270 , SER A:302 , GLU A:399 , PHE A:401 , PHE A:465 , MG A:6701 , HOH A:7045 , HOH A:7058 , HOH A:7060 , HOH A:7061 , HOH A:7062 , HOH A:7063 , HOH A:7064 , HOH A:7159 , HOH A:7257 , HOH A:7259 , HOH A:7507 , HOH A:7508
BINDING SITE FOR RESIDUE NAD A 6501
18
BC9
SOFTWARE
ILE B:165 , ILE B:166 , PRO B:167 , TRP B:168 , ASN B:169 , LYS B:192 , GLU B:195 , GLY B:225 , GLY B:229 , ALA B:230 , PHE B:243 , THR B:244 , GLY B:245 , SER B:246 , ILE B:249 , ILE B:253 , GLU B:268 , LEU B:269 , GLY B:270 , SER B:302 , GLU B:399 , PHE B:401 , PHE B:465 , MG B:6702 , HOH B:6966 , HOH B:7011 , HOH B:7012 , HOH B:7013 , HOH B:7184 , HOH B:7189 , HOH B:7190 , HOH B:7191 , HOH B:7194 , HOH B:7195 , HOH B:7453
BINDING SITE FOR RESIDUE NAD B 6502
19
CC1
SOFTWARE
ILE C:165 , ILE C:166 , PRO C:167 , TRP C:168 , ASN C:169 , LYS C:192 , GLU C:195 , GLY C:225 , GLY C:229 , ALA C:230 , PHE C:243 , THR C:244 , GLY C:245 , SER C:246 , ILE C:249 , ILE C:253 , GLU C:268 , LEU C:269 , GLY C:270 , SER C:302 , GLU C:399 , PHE C:401 , PHE C:465 , MG C:6703 , HOH C:6999 , HOH C:7000 , HOH C:7221 , HOH C:7222 , HOH C:7223 , HOH C:7242 , HOH C:7244 , HOH C:7256 , HOH C:7257 , HOH C:7501 , HOH C:7504
BINDING SITE FOR RESIDUE NAD C 6503
20
CC2
SOFTWARE
ILE D:165 , ILE D:166 , PRO D:167 , TRP D:168 , ASN D:169 , LYS D:192 , GLU D:195 , GLY D:225 , GLY D:229 , ALA D:230 , PHE D:243 , THR D:244 , GLY D:245 , SER D:246 , ILE D:249 , ILE D:253 , GLU D:268 , LEU D:269 , GLY D:270 , SER D:302 , GLU D:399 , PHE D:401 , PHE D:465 , MG D:6704 , HOH D:7067 , HOH D:7068 , HOH D:7069 , HOH D:7072 , HOH D:7073 , HOH D:7074 , HOH D:7076 , HOH D:7440 , HOH D:7447 , HOH D:7448 , HOH D:7525 , HOH D:7531
BINDING SITE FOR RESIDUE NAD D 6504
21
CC3
SOFTWARE
ILE E:165 , ILE E:166 , PRO E:167 , TRP E:168 , ASN E:169 , LYS E:192 , ALA E:194 , GLU E:195 , GLY E:225 , GLY E:229 , ALA E:230 , PHE E:243 , THR E:244 , GLY E:245 , SER E:246 , ILE E:249 , ILE E:253 , GLU E:268 , LEU E:269 , GLY E:270 , SER E:302 , GLU E:399 , PHE E:401 , PHE E:465 , HOH E:2625 , HOH E:2626 , HOH E:2627 , HOH E:2630 , HOH E:2631 , HOH E:2632 , HOH E:2866 , HOH E:2871 , HOH E:3894 , HOH E:4784 , HOH E:4785 , HOH E:4814 , MG E:6705
BINDING SITE FOR RESIDUE NAD E 6505
22
CC4
SOFTWARE
ILE F:165 , ILE F:166 , PRO F:167 , TRP F:168 , ASN F:169 , LYS F:192 , GLU F:195 , GLY F:225 , GLY F:229 , ALA F:230 , PHE F:243 , THR F:244 , GLY F:245 , SER F:246 , ILE F:249 , ILE F:253 , GLU F:268 , LEU F:269 , GLY F:270 , SER F:302 , GLU F:399 , PHE F:401 , PHE F:465 , HOH F:2814 , HOH F:2815 , HOH F:2833 , HOH F:2834 , HOH F:2835 , HOH F:2837 , HOH F:2838 , HOH F:2841 , HOH F:3074 , HOH F:3080 , HOH F:4917 , HOH F:4945 , MG F:6706
BINDING SITE FOR RESIDUE NAD F 6506
23
CC5
SOFTWARE
ILE G:165 , ILE G:166 , PRO G:167 , TRP G:168 , ASN G:169 , LYS G:192 , GLU G:195 , GLY G:225 , GLY G:229 , ALA G:230 , PHE G:243 , THR G:244 , GLY G:245 , SER G:246 , ILE G:249 , ILE G:253 , GLU G:268 , LEU G:269 , GLY G:270 , SER G:302 , GLU G:399 , PHE G:401 , PHE G:465 , HOH G:3209 , HOH G:3210 , HOH G:3211 , HOH G:3212 , HOH G:3227 , HOH G:4358 , HOH G:4359 , HOH G:4361 , HOH G:4362 , HOH G:4509 , HOH G:4654 , HOH G:4688 , MG G:6707
BINDING SITE FOR RESIDUE NAD G 6507
24
CC6
SOFTWARE
ILE H:165 , ILE H:166 , PRO H:167 , TRP H:168 , ASN H:169 , LYS H:192 , GLU H:195 , GLY H:225 , GLY H:229 , ALA H:230 , PHE H:243 , THR H:244 , GLY H:245 , SER H:246 , ILE H:249 , ILE H:253 , GLU H:268 , LEU H:269 , GLY H:270 , SER H:302 , GLU H:399 , PHE H:401 , PHE H:465 , HOH H:2227 , HOH H:2228 , HOH H:2231 , HOH H:2232 , HOH H:2235 , HOH H:2236 , HOH H:2237 , HOH H:4314 , HOH H:4682 , HOH H:4685 , HOH H:4743 , MG H:6708
BINDING SITE FOR RESIDUE NAD H 6508
25
CC7
SOFTWARE
GLU A:157 , PRO A:158 , VAL A:159 , HOH A:7072 , TYR B:468
BINDING SITE FOR RESIDUE GAI A 6801
26
CC8
SOFTWARE
ILE A:146 , ASP A:147 , PHE A:150 , HOH A:7138 , PHE B:459 , HOH B:7147
BINDING SITE FOR RESIDUE GAI A 6811
27
CC9
SOFTWARE
TYR A:468 , GLU B:157 , PRO B:158 , VAL B:159 , HOH B:7265
BINDING SITE FOR RESIDUE GAI B 6802
28
DC1
SOFTWARE
VAL A:458 , PHE A:459 , HOH A:7185 , ILE B:146 , ASP B:147 , PHE B:150 , HOH B:7128
BINDING SITE FOR RESIDUE GAI B 6812
29
DC2
SOFTWARE
PHE C:70 , GLU C:157 , PRO C:158 , VAL C:159 , HOH C:7072 , HOH C:7073 , HOH C:7451 , TYR D:468
BINDING SITE FOR RESIDUE GAI C 6803
30
DC3
SOFTWARE
ILE C:146 , ASP C:147 , PHE C:150 , HOH C:6969 , VAL D:458 , PHE D:459
BINDING SITE FOR RESIDUE GAI C 6813
31
DC4
SOFTWARE
PHE C:350 , ILE C:373 , ALA C:375 , ASP C:376 , GLY C:378 , EDO C:6963 , HOH C:7203
BINDING SITE FOR RESIDUE GAI C 6823
32
DC5
SOFTWARE
TYR C:468 , GLU D:157 , PRO D:158 , VAL D:159 , HOH D:7111
BINDING SITE FOR RESIDUE GAI D 6804
33
DC6
SOFTWARE
PHE C:459 , HOH C:7527 , ILE D:146 , ASP D:147 , PHE D:150 , HOH D:7239
BINDING SITE FOR RESIDUE GAI D 6814
34
DC7
SOFTWARE
GLU E:157 , PRO E:158 , VAL E:159 , HOH E:2569 , HOH E:4541
BINDING SITE FOR RESIDUE GAI E 6805
35
DC8
SOFTWARE
ILE E:146 , ASP E:147 , PHE E:150 , HOH E:2357 , PHE F:459 , HOH F:3085
BINDING SITE FOR RESIDUE GAI E 6815
36
DC9
SOFTWARE
TYR E:468 , GLU F:157 , PRO F:158 , VAL F:159 , HOH F:4222 , HOH F:4303 , HOH F:4304
BINDING SITE FOR RESIDUE GAI F 6806
37
EC1
SOFTWARE
PHE E:459 , HOH E:4761 , ILE F:146 , ASP F:147 , PHE F:150 , HOH F:2606
BINDING SITE FOR RESIDUE GAI F 6816
38
EC2
SOFTWARE
PHE F:350 , ILE F:373 , ALA F:375 , ASP F:376 , GLY F:378 , HOH F:2777 , HOH F:2779 , EDO F:6966
BINDING SITE FOR RESIDUE GAI F 6826
39
EC3
SOFTWARE
PHE G:70 , GLU G:157 , PRO G:158 , VAL G:159 , HOH G:3302 , HOH G:3303 , HOH G:4755 , TYR H:468
BINDING SITE FOR RESIDUE GAI G 6807
40
EC4
SOFTWARE
ILE G:146 , ASP G:147 , PHE G:150 , HOH G:2726 , HOH G:4157 , HOH G:4309 , PHE H:459
BINDING SITE FOR RESIDUE GAI G 6817
41
EC5
SOFTWARE
TYR G:468 , PHE H:70 , GLU H:157 , PRO H:158 , VAL H:159 , HOH H:3996
BINDING SITE FOR RESIDUE GAI H 6808
42
EC6
SOFTWARE
PHE G:459 , HOH G:4513 , ILE H:146 , ASP H:147 , PHE H:150 , HOH H:3013
BINDING SITE FOR RESIDUE GAI H 6818
43
EC7
SOFTWARE
TYR A:153 , ARG A:155 , HOH A:7127 , SER B:443 , PHE D:151
BINDING SITE FOR RESIDUE EDO A 6901
44
EC8
SOFTWARE
GLN A:14 , ASN A:41 , THR A:44 , GLU A:46 , HOH A:6983
BINDING SITE FOR RESIDUE EDO A 6911
45
EC9
SOFTWARE
PHE A:18 , TYR A:203 , HOH A:6966
BINDING SITE FOR RESIDUE EDO A 6921
46
FC1
SOFTWARE
TYR A:441 , GLN A:444 , ALA A:445 , HOH A:7090 , LEU B:72 , GLN C:497 , HOH C:7063
BINDING SITE FOR RESIDUE EDO A 6941
47
FC2
SOFTWARE
SER A:443 , TYR B:153 , ARG B:155 , HOH B:7271 , PHE C:151
BINDING SITE FOR RESIDUE EDO B 6902
48
FC3
SOFTWARE
GLN B:14 , ASN B:41 , THR B:44 , LEU B:108 , HOH B:7321 , HOH B:7539
BINDING SITE FOR RESIDUE EDO B 6912
49
FC4
SOFTWARE
ARG B:97 , ASP B:98 , THR B:100 , TYR B:101 , HOH B:7348 , HOH B:7350 , ALA E:7 , HOH E:3841 , HOH E:4765
BINDING SITE FOR RESIDUE EDO B 6922
50
FC5
SOFTWARE
LEU A:72 , TYR B:441 , GLN B:444 , ALA B:445 , HOH B:6951 , GLN D:497 , HOH D:7253
BINDING SITE FOR RESIDUE EDO B 6942
51
FC6
SOFTWARE
PHE B:151 , TYR C:153 , ARG C:155 , HOH C:7453 , SER D:443
BINDING SITE FOR RESIDUE EDO C 6903
52
FC7
SOFTWARE
ASN C:41 , THR C:44 , GLU C:46 , LEU C:108 , HOH C:7328 , HOH C:7329
BINDING SITE FOR RESIDUE EDO C 6913
53
FC8
SOFTWARE
PHE C:18 , TYR C:101 , TYR C:203 , HOH C:7484 , HOH C:7485
BINDING SITE FOR RESIDUE EDO C 6923
54
FC9
SOFTWARE
GLN A:497 , TYR C:441 , GLN C:444 , ALA C:445 , LEU D:72
BINDING SITE FOR RESIDUE EDO C 6943
55
GC1
SOFTWARE
GLU C:347 , PHE C:350 , GAI C:6823 , HOH C:7203 , GLY F:45
BINDING SITE FOR RESIDUE EDO C 6963
56
GC2
SOFTWARE
PHE A:151 , SER C:443 , TYR D:153 , ARG D:155 , HOH D:7419
BINDING SITE FOR RESIDUE EDO D 6904
57
GC3
SOFTWARE
ASN D:41 , THR D:44 , GLU D:46 , HOH D:6951 , HOH D:6952 , GLU H:46
BINDING SITE FOR RESIDUE EDO D 6914
58
GC4
SOFTWARE
GLU D:414 , TYR D:441 , HOH D:7193 , HOH D:7198 , HOH D:7292 , LYS G:361
BINDING SITE FOR RESIDUE EDO D 6944
59
GC5
SOFTWARE
TYR E:153 , ARG E:155 , SER F:443 , PHE H:151
BINDING SITE FOR RESIDUE EDO E 6905
60
GC6
SOFTWARE
GLN E:14 , ASN E:41 , THR E:44 , LEU E:108
BINDING SITE FOR RESIDUE EDO E 6915
61
GC7
SOFTWARE
PHE E:18 , TYR E:101 , TYR E:203 , HOH E:3847 , HOH E:4623
BINDING SITE FOR RESIDUE EDO E 6925
62
GC8
SOFTWARE
SER E:443 , TYR F:153 , ARG F:155 , PHE G:151
BINDING SITE FOR RESIDUE EDO F 6906
63
GC9
SOFTWARE
ASN F:41 , THR F:44 , GLU F:46 , ILE F:48 , LEU F:108 , HOH F:2762 , HOH F:2763
BINDING SITE FOR RESIDUE EDO F 6916
64
HC1
SOFTWARE
HOH E:3765 , HOH E:3766 , PHE F:18 , TYR F:101 , TYR F:203 , HOH F:2416 , HOH F:4269
BINDING SITE FOR RESIDUE EDO F 6926
65
HC2
SOFTWARE
LEU E:72 , TYR F:441 , GLN F:444 , ALA F:445 , GLN H:497
BINDING SITE FOR RESIDUE EDO F 6946
66
HC3
SOFTWARE
HOH B:7527 , ALA F:68 , SER F:74 , HOH F:2706
BINDING SITE FOR RESIDUE EDO F 6956
67
HC4
SOFTWARE
GLY C:45 , GLU F:347 , HOH F:2777 , GAI F:6826
BINDING SITE FOR RESIDUE EDO F 6966
68
HC5
SOFTWARE
PHE F:151 , TYR G:153 , ARG G:155 , HOH G:3827 , SER H:443
BINDING SITE FOR RESIDUE EDO G 6907
69
HC6
SOFTWARE
ASN G:41 , THR G:44 , GLU G:46 , HOH G:3185
BINDING SITE FOR RESIDUE EDO G 6917
70
HC7
SOFTWARE
PHE G:18 , TYR G:101 , TYR G:203 , HOH G:2948 , HOH G:2949 , HOH G:3180
BINDING SITE FOR RESIDUE EDO G 6927
71
HC8
SOFTWARE
PHE E:151 , SER G:443 , TYR H:153 , ARG H:155 , HOH H:4030
BINDING SITE FOR RESIDUE EDO H 6908
72
HC9
SOFTWARE
GLU D:46 , ARG D:377 , ASN H:41 , THR H:44 , GLU H:46 , HOH H:3651 , HOH H:3653 , HOH H:3655
BINDING SITE FOR RESIDUE EDO H 6918
73
IC1
SOFTWARE
LYS E:361 , PHE H:18 , TYR H:101 , TYR H:203 , HOH H:2278
BINDING SITE FOR RESIDUE EDO H 6928
74
IC2
SOFTWARE
GLN F:497 , LEU G:72 , TYR H:441 , GLN H:444 , ALA H:445
BINDING SITE FOR RESIDUE EDO H 6948
[
close Site info
]
SAPs(SNPs)/Variants
(3, 24)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011869 (E320V, chain A/B/C/D/E/F/G/H, )
2: VAR_011302 (E479K, chain A/B/C/D/E/F/G/H, )
3: VAR_002248 (E487K, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011869
E
337
V
ALDH2_HUMAN
Polymorphism
1062136
A/B/C/D/E/F/G/H
E
320
V
2
UniProt
VAR_011302
E
496
K
ALDH2_HUMAN
Polymorphism
---
A/B/C/D/E/F/G/H
E
479
K
3
UniProt
VAR_002248
E
504
K
ALDH2_HUMAN
Polymorphism
671
A/B/C/D/E/F/G/H
E
487
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:267-274,B:267-274,C:267-274,D:26...)
2: ALDEHYDE_DEHYDR_CYS (A:295-306,B:295-306,C:295-306,D:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ALDH2_HUMAN
284-291
8
A:267-274
B:267-274
C:267-274
D:267-274
E:267-274
F:267-274
G:267-274
H:267-274
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
ALDH2_HUMAN
312-323
8
A:295-306
B:295-306
C:295-306
D:295-306
E:295-306
F:295-306
G:295-306
H:295-306
[
close PROSITE info
]
Exons
(13, 104)
Info
All Exons
Exon 1.1 (A:7-21 | B:7-21 | C:7-21 | D:7-21 ...)
Exon 1.2 (A:22-56 | B:22-56 | C:22-56 | D:22...)
Exon 1.3 (A:57-103 | B:57-103 | C:57-103 | D...)
Exon 1.4 (A:104-130 | B:104-130 | C:104-130 ...)
Exon 1.5 (A:130-167 | B:130-167 | C:130-167 ...)
Exon 1.6 (A:168-210 | B:168-210 | C:168-210 ...)
Exon 1.7 (A:211-248 | B:211-248 | C:211-248 ...)
Exon 1.8 (A:249-283 | B:249-283 | C:249-283 ...)
Exon 1.9 (A:283-344 | B:283-344 | C:283-344 ...)
Exon 1.10 (A:345-399 | B:345-399 | C:345-399 ...)
Exon 1.11 (A:400-452 | B:400-452 | C:400-452 ...)
Exon 1.12 (A:452-490 | B:452-490 | C:452-490 ...)
Exon 1.13 (A:491-500 | B:491-500 | C:491-500 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261733
1
ENSE00001297894
chr12:
112204346-112204900
555
ALDH2_HUMAN
1-38
38
8
A:7-21
B:7-21
C:7-21
D:7-21
E:7-21
F:7-21
G:7-21
H:7-21
15
15
15
15
15
15
15
15
1.2
ENST00000261733
2
ENSE00001302483
chr12:
112219722-112219826
105
ALDH2_HUMAN
39-73
35
8
A:22-56
B:22-56
C:22-56
D:22-56
E:22-56
F:22-56
G:22-56
H:22-56
35
35
35
35
35
35
35
35
1.3
ENST00000261733
3
ENSE00000755216
chr12:
112220962-112221102
141
ALDH2_HUMAN
74-120
47
8
A:57-103
B:57-103
C:57-103
D:57-103
E:57-103
F:57-103
G:57-103
H:57-103
47
47
47
47
47
47
47
47
1.4
ENST00000261733
4
ENSE00000755217
chr12:
112223071-112223150
80
ALDH2_HUMAN
121-147
27
8
A:104-130
B:104-130
C:104-130
D:104-130
E:104-130
F:104-130
G:104-130
H:104-130
27
27
27
27
27
27
27
27
1.5
ENST00000261733
5
ENSE00000755218
chr12:
112227627-112227738
112
ALDH2_HUMAN
147-184
38
8
A:130-167
B:130-167
C:130-167
D:130-167
E:130-167
F:130-167
G:130-167
H:130-167
38
38
38
38
38
38
38
38
1.6
ENST00000261733
6
ENSE00001316176
chr12:
112228238-112228366
129
ALDH2_HUMAN
185-227
43
8
A:168-210
B:168-210
C:168-210
D:168-210
E:168-210
F:168-210
G:168-210
H:168-210
43
43
43
43
43
43
43
43
1.7
ENST00000261733
7
ENSE00000755220
chr12:
112229110-112229223
114
ALDH2_HUMAN
228-265
38
8
A:211-248
B:211-248
C:211-248
D:211-248
E:211-248
F:211-248
G:211-248
H:211-248
38
38
38
38
38
38
38
38
1.8
ENST00000261733
8
ENSE00000755221
chr12:
112229865-112229967
103
ALDH2_HUMAN
266-300
35
8
A:249-283
B:249-283
C:249-283
D:249-283
E:249-283
F:249-283
G:249-283
H:249-283
35
35
35
35
35
35
35
35
1.9
ENST00000261733
9
ENSE00000755222
chr12:
112230402-112230586
185
ALDH2_HUMAN
300-361
62
8
A:283-344
B:283-344
C:283-344
D:283-344
E:283-344
F:283-344
G:283-344
H:283-344
62
62
62
62
62
62
62
62
1.10
ENST00000261733
10
ENSE00000755223
chr12:
112235882-112236046
165
ALDH2_HUMAN
362-416
55
8
A:345-399
B:345-399
C:345-399
D:345-399
E:345-399
F:345-399
G:345-399
H:345-399
55
55
55
55
55
55
55
55
1.11
ENST00000261733
11
ENSE00000755233
chr12:
112237710-112237867
158
ALDH2_HUMAN
417-469
53
8
A:400-452
B:400-452
C:400-452
D:400-452
E:400-452
F:400-452
G:400-452
H:400-452
53
53
53
53
53
53
53
53
1.12
ENST00000261733
12
ENSE00001304774
chr12:
112241663-112241777
115
ALDH2_HUMAN
469-507
39
8
A:452-490
B:452-490
C:452-490
D:452-490
E:452-490
F:452-490
G:452-490
H:452-490
39
39
39
39
39
39
39
39
1.13
ENST00000261733
13
ENSE00001129780
chr12:
112247347-112247782
436
ALDH2_HUMAN
508-517
10
8
A:491-500
B:491-500
C:491-500
D:491-500
E:491-500
F:491-500
G:491-500
H:491-500
10
10
10
10
10
10
10
10
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1o04a_ (A:)
1b: SCOP_d1o04b_ (B:)
1c: SCOP_d1o04c_ (C:)
1d: SCOP_d1o04d_ (D:)
1e: SCOP_d1o04e_ (E:)
1f: SCOP_d1o04f_ (F:)
1g: SCOP_d1o04g_ (G:)
1h: SCOP_d1o04h_ (H:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d1o04a_
A:
1b
d1o04b_
B:
1c
d1o04c_
C:
1d
d1o04d_
D:
1e
d1o04e_
E:
1f
d1o04f_
F:
1g
d1o04g_
G:
1h
d1o04h_
H:
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1o04A01 (A:8-270,A:461-500)
1b: CATH_1o04B01 (B:8-270,B:461-500)
1c: CATH_1o04C01 (C:8-270,C:461-500)
1d: CATH_1o04D01 (D:8-270,D:461-500)
1e: CATH_1o04E01 (E:8-270,E:461-500)
1f: CATH_1o04F01 (F:8-270,F:461-500)
1g: CATH_1o04G01 (G:8-270,G:461-500)
1h: CATH_1o04H01 (H:8-270,H:461-500)
2a: CATH_1o04A02 (A:271-460)
2b: CATH_1o04B02 (B:271-460)
2c: CATH_1o04C02 (C:271-460)
2d: CATH_1o04D02 (D:271-460)
2e: CATH_1o04E02 (E:271-460)
2f: CATH_1o04F02 (F:271-460)
2g: CATH_1o04G02 (G:271-460)
2h: CATH_1o04H02 (H:271-460)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Human (Homo sapiens)
(22)
1a
1o04A01
A:8-270,A:461-500
1b
1o04B01
B:8-270,B:461-500
1c
1o04C01
C:8-270,C:461-500
1d
1o04D01
D:8-270,D:461-500
1e
1o04E01
E:8-270,E:461-500
1f
1o04F01
F:8-270,F:461-500
1g
1o04G01
G:8-270,G:461-500
1h
1o04H01
H:8-270,H:461-500
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Human (Homo sapiens)
(22)
2a
1o04A02
A:271-460
2b
1o04B02
B:271-460
2c
1o04C02
C:271-460
2d
1o04D02
D:271-460
2e
1o04E02
E:271-460
2f
1o04F02
F:271-460
2g
1o04G02
G:271-460
2h
1o04H02
H:271-460
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_1o04H01 (H:28-491)
1b: PFAM_Aldedh_1o04H02 (H:28-491)
1c: PFAM_Aldedh_1o04H03 (H:28-491)
1d: PFAM_Aldedh_1o04H04 (H:28-491)
1e: PFAM_Aldedh_1o04H05 (H:28-491)
1f: PFAM_Aldedh_1o04H06 (H:28-491)
1g: PFAM_Aldedh_1o04H07 (H:28-491)
1h: PFAM_Aldedh_1o04H08 (H:28-491)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Homo sapiens (Human)
(21)
1a
Aldedh-1o04H01
H:28-491
1b
Aldedh-1o04H02
H:28-491
1c
Aldedh-1o04H03
H:28-491
1d
Aldedh-1o04H04
H:28-491
1e
Aldedh-1o04H05
H:28-491
1f
Aldedh-1o04H06
H:28-491
1g
Aldedh-1o04H07
H:28-491
1h
Aldedh-1o04H08
H:28-491
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (734 KB)
Header - Asym.Unit
Biol.Unit 1 (366 KB)
Header - Biol.Unit 1
Biol.Unit 2 (367 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1O04
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help