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1NZY
Biol. Unit 2
Info
Asym.Unit (150 KB)
Biol.Unit 1 (284 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
4-CHLOROBENZOYL COENZYME A DEHALOGENASE FROM PSEUDOMONAS SP. STRAIN CBS-3
Authors
:
M. M. Benning, H. M. Holden
Date
:
02 Apr 96 (Deposition) - 07 Jul 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Biol. Unit 2: A,B,C (1x)
Keywords
:
Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. M. Benning, K. L. Taylor, R. -. Q. Liu, G. Yang, H. Xiang, G. Wesenberg D. Dunaway-Mariano, H. M. Holden
Structure Of 4-Chlorobenzoyl Coenzyme A Dehalogenase Determined To 1. 8 A Resolution: An Enzyme Catalyst Generate Via Adaptive Mutation.
Biochemistry V. 35 8103 1996
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 4-HYDROXYBENZOYL COENZYME A (BCAa)
1b: 4-HYDROXYBENZOYL COENZYME A (BCAb)
1c: 4-HYDROXYBENZOYL COENZYME A (BCAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: PHOSPHATE ION (PO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BCA
3
Ligand/Ion
4-HYDROXYBENZOYL COENZYME A
2
CA
-1
Ligand/Ion
CALCIUM ION
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:49 , LEU A:202 , ALA A:203 , ALA A:205 , THR A:207 , GLN A:210
BINDING SITE FOR RESIDUE CA A 271
2
AC2
SOFTWARE
GLY B:49 , LEU B:202 , ALA B:203 , ALA B:205 , THR B:207 , GLN B:210
BINDING SITE FOR RESIDUE CA B 271
3
AC3
SOFTWARE
GLY C:49 , LEU C:202 , ALA C:203 , ALA C:205 , THR C:207 , GLN C:210
BINDING SITE FOR RESIDUE CA C 271
4
AC4
SOFTWARE
GLU B:57 , ASP B:58 , ASN B:108 , ALA B:128 , LYS B:188 , ARG B:192
BINDING SITE FOR RESIDUE PO4 B 902
5
AC5
SOFTWARE
ARG A:22 , HIS A:23 , ARG A:24 , ALA A:62 , GLY A:63 , PHE A:64 , TYR A:65 , LEU A:66 , ARG A:67 , TRP A:89 , GLY A:113 , GLY A:114 , TRP A:137 , ASP A:145 , THR A:146 , ARG A:251 , ASP A:254 , HIS A:256 , HOH A:313 , HOH A:354 , HOH A:429 , HOH A:432 , HOH A:462 , PHE B:252 , ARG B:257
BINDING SITE FOR RESIDUE BCA A 272
6
AC6
SOFTWARE
ARG B:22 , HIS B:23 , ARG B:24 , ALA B:62 , GLY B:63 , PHE B:64 , TYR B:65 , LEU B:66 , ARG B:67 , TRP B:89 , GLY B:113 , GLY B:114 , TRP B:137 , ASP B:145 , THR B:146 , LYS C:19 , GLU C:57 , PHE C:252 , ALA C:258
BINDING SITE FOR RESIDUE BCA B 272
7
AC7
SOFTWARE
PHE A:252 , ARG A:257 , ALA A:258 , ASP A:259 , ARG C:22 , HIS C:23 , ARG C:24 , ALA C:26 , ALA C:62 , GLY C:63 , PHE C:64 , TYR C:65 , LEU C:66 , ARG C:67 , TRP C:89 , GLY C:113 , GLY C:114 , TRP C:137 , ILE C:140 , ASP C:145 , THR C:146 , HOH C:330 , HOH C:345
BINDING SITE FOR RESIDUE BCA C 272
8
AC8
SOFTWARE
GLU A:201 , PRO A:261 , GLN A:262 , GLU A:264 , HOH A:318 , HOH A:424 , ARG B:251 , HIS B:256
BINDING SITE FOR RESIDUE EDO B 900
9
AC9
SOFTWARE
TYR B:2 , GLU B:3 , ILE B:5
BINDING SITE FOR RESIDUE EDO B 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:104-124,B:104-124,C:104-124)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
CBADH_PSEUC
104-124
3
A:104-124
B:104-124
C:104-124
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1nzya_ (A:)
1b: SCOP_d1nzyb_ (B:)
1c: SCOP_d1nzyc_ (C:)
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
4-Chlorobenzoyl-CoA dehalogenase
(2)
Pseudomonas sp., strain CBS-3 [TaxId: 306]
(2)
1a
d1nzya_
A:
1b
d1nzyb_
B:
1c
d1nzyc_
C:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1nzyA01 (A:1-204)
1b: CATH_1nzyC01 (C:1-204)
1c: CATH_1nzyB01 (B:1-204)
2a: CATH_1nzyC02 (C:205-269)
2b: CATH_1nzyA02 (A:205-269)
2c: CATH_1nzyB02 (B:205-269)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Cbs3 (Pseudomonas sp)
(2)
1a
1nzyA01
A:1-204
1b
1nzyC01
C:1-204
1c
1nzyB01
B:1-204
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Cbs3 (Pseudomonas sp)
(2)
2a
1nzyC02
C:205-269
2b
1nzyA02
A:205-269
2c
1nzyB02
B:205-269
[
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_ECH_1nzyC01 (C:6-255)
1b: PFAM_ECH_1nzyC02 (C:6-255)
1c: PFAM_ECH_1nzyC03 (C:6-255)
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)
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)
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Pseudomonas sp. (strain CBS-3)
(2)
1a
ECH-1nzyC01
C:6-255
1b
ECH-1nzyC02
C:6-255
1c
ECH-1nzyC03
C:6-255
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (150 KB)
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