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1NZY
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (284 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
4-CHLOROBENZOYL COENZYME A DEHALOGENASE FROM PSEUDOMONAS SP. STRAIN CBS-3
Authors
:
M. M. Benning, H. M. Holden
Date
:
02 Apr 96 (Deposition) - 07 Jul 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Biol. Unit 2: A,B,C (1x)
Keywords
:
Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. M. Benning, K. L. Taylor, R. -. Q. Liu, G. Yang, H. Xiang, G. Wesenberg D. Dunaway-Mariano, H. M. Holden
Structure Of 4-Chlorobenzoyl Coenzyme A Dehalogenase Determined To 1. 8 A Resolution: An Enzyme Catalyst Generate Via Adaptive Mutation.
Biochemistry V. 35 8103 1996
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 4-HYDROXYBENZOYL COENZYME A (BCAa)
1b: 4-HYDROXYBENZOYL COENZYME A (BCAb)
1c: 4-HYDROXYBENZOYL COENZYME A (BCAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCA
3
Ligand/Ion
4-HYDROXYBENZOYL COENZYME A
2
CA
3
Ligand/Ion
CALCIUM ION
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:49 , LEU A:202 , ALA A:203 , ALA A:205 , THR A:207 , GLN A:210
BINDING SITE FOR RESIDUE CA A 271
2
AC2
SOFTWARE
GLY B:49 , LEU B:202 , ALA B:203 , ALA B:205 , THR B:207 , GLN B:210
BINDING SITE FOR RESIDUE CA B 271
3
AC3
SOFTWARE
GLY C:49 , LEU C:202 , ALA C:203 , ALA C:205 , THR C:207 , GLN C:210
BINDING SITE FOR RESIDUE CA C 271
4
AC4
SOFTWARE
GLU B:57 , ASP B:58 , ASN B:108 , ALA B:128 , LYS B:188 , ARG B:192
BINDING SITE FOR RESIDUE PO4 B 902
5
AC5
SOFTWARE
ARG A:22 , HIS A:23 , ARG A:24 , ALA A:62 , GLY A:63 , PHE A:64 , TYR A:65 , LEU A:66 , ARG A:67 , TRP A:89 , GLY A:113 , GLY A:114 , TRP A:137 , ASP A:145 , THR A:146 , ARG A:251 , ASP A:254 , HIS A:256 , HOH A:313 , HOH A:354 , HOH A:429 , HOH A:432 , HOH A:462 , PHE B:252 , ARG B:257
BINDING SITE FOR RESIDUE BCA A 272
6
AC6
SOFTWARE
ARG B:22 , HIS B:23 , ARG B:24 , ALA B:62 , GLY B:63 , PHE B:64 , TYR B:65 , LEU B:66 , ARG B:67 , TRP B:89 , GLY B:113 , GLY B:114 , TRP B:137 , ASP B:145 , THR B:146 , LYS C:19 , GLU C:57 , PHE C:252 , ALA C:258
BINDING SITE FOR RESIDUE BCA B 272
7
AC7
SOFTWARE
PHE A:252 , ARG A:257 , ALA A:258 , ASP A:259 , ARG C:22 , HIS C:23 , ARG C:24 , ALA C:26 , ALA C:62 , GLY C:63 , PHE C:64 , TYR C:65 , LEU C:66 , ARG C:67 , TRP C:89 , GLY C:113 , GLY C:114 , TRP C:137 , ILE C:140 , ASP C:145 , THR C:146 , HOH C:330 , HOH C:345
BINDING SITE FOR RESIDUE BCA C 272
8
AC8
SOFTWARE
GLU A:201 , PRO A:261 , GLN A:262 , GLU A:264 , HOH A:318 , HOH A:424 , ARG B:251 , HIS B:256
BINDING SITE FOR RESIDUE EDO B 900
9
AC9
SOFTWARE
TYR B:2 , GLU B:3 , ILE B:5
BINDING SITE FOR RESIDUE EDO B 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:104-124,B:104-124,C:104-124)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
CBADH_PSEUC
104-124
3
A:104-124
B:104-124
C:104-124
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1nzya_ (A:)
1b: SCOP_d1nzyb_ (B:)
1c: SCOP_d1nzyc_ (C:)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
4-Chlorobenzoyl-CoA dehalogenase
(2)
Pseudomonas sp., strain CBS-3 [TaxId: 306]
(2)
1a
d1nzya_
A:
1b
d1nzyb_
B:
1c
d1nzyc_
C:
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1nzyA01 (A:1-204)
1b: CATH_1nzyC01 (C:1-204)
1c: CATH_1nzyB01 (B:1-204)
2a: CATH_1nzyC02 (C:205-269)
2b: CATH_1nzyA02 (A:205-269)
2c: CATH_1nzyB02 (B:205-269)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Cbs3 (Pseudomonas sp)
(2)
1a
1nzyA01
A:1-204
1b
1nzyC01
C:1-204
1c
1nzyB01
B:1-204
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Cbs3 (Pseudomonas sp)
(2)
2a
1nzyC02
C:205-269
2b
1nzyA02
A:205-269
2c
1nzyB02
B:205-269
[
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_ECH_1nzyC01 (C:6-255)
1b: PFAM_ECH_1nzyC02 (C:6-255)
1c: PFAM_ECH_1nzyC03 (C:6-255)
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)
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Pseudomonas sp. (strain CBS-3)
(2)
1a
ECH-1nzyC01
C:6-255
1b
ECH-1nzyC02
C:6-255
1c
ECH-1nzyC03
C:6-255
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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