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1NZI
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CUB1-EGF INTERACTION DOMAIN OF COMPLEMENT PROTEASE C1S
Authors
:
L. A. Gregory, N. M. Thielens, G. J. Arlaud, J. C. Fontecilla-Camps, C. Gaboriaud
Date
:
18 Feb 03 (Deposition) - 10 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Calcium, Complement, Innate Immunity, Modular Structure, Cub, Egf, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. A. Gregory, N. M. Thielens, G. J. Arlaud, J. C. Fontecilla-Camps, C. Gaboriaud
X-Ray Structure Of The Ca2+-Binding Interaction Domain Of C1S. Insights Into The Assembly Of The C1 Complex Of Complement
J. Biol. Chem. V. 278 32157 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:116 , ILE A:117 , GLU A:119 , ASN A:134 , PHE A:135 , GLY A:138 , HOH A:1005
BINDING SITE FOR RESIDUE CA A 1001
2
AC2
SOFTWARE
ASP B:116 , ILE B:117 , GLU B:119 , ASN B:134 , PHE B:135 , GLY B:138 , HOH B:1010
BINDING SITE FOR RESIDUE CA B 1002
3
AC3
SOFTWARE
GLU A:45 , ASP A:53 , ASP A:98 , HOH A:1109 , HOH A:1110
BINDING SITE FOR RESIDUE MG A 1003
4
AC4
SOFTWARE
GLU B:45 , ASP B:53 , ASP B:98 , HOH B:1122 , HOH B:1134
BINDING SITE FOR RESIDUE MG B 1004
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033643 (R104H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033643
R
119
H
C1S_HUMAN
Polymorphism
12146727
A/B
R
104
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_CA (A:116-141,B:116-141)
2: ASX_HYDROXYL (A:132-143,B:132-143)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
C1S_HUMAN
131-156
2
A:116-141
B:116-141
2
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
C1S_HUMAN
147-158
2
A:132-143
B:132-143
[
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Exons
(4, 8)
Info
All Exons
Exon 1.7b (A:1-56 | B:3-56)
Exon 1.8c (A:57-116 (gaps) | B:57-116 (gaps))
Exon 1.10e (A:116-158 (gaps) | B:116-158)
Exon 1.11b (A:158-159 | B:158-159)
View:
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All Exon Boundaries
1: Boundary 1.6d/1.7b
2: Boundary 1.7b/1.8c
3: Boundary 1.8c/1.10e
4: Boundary 1.10e/1.11b
5: Boundary 1.11b/1.12b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5b
ENST00000360817
5b
ENSE00001554821
chr12:
7167980-7168181
202
C1S_HUMAN
-
0
0
-
-
1.6d
ENST00000360817
6d
ENSE00001805598
chr12:
7169143-7169221
79
C1S_HUMAN
1-2
2
0
-
-
1.7b
ENST00000360817
7b
ENSE00001609294
chr12:
7169779-7169986
208
C1S_HUMAN
2-71
70
2
A:1-56
B:3-56
56
54
1.8c
ENST00000360817
8c
ENSE00001307751
chr12:
7170194-7170371
178
C1S_HUMAN
72-131
60
2
A:57-116 (gaps)
B:57-116 (gaps)
60
60
1.10e
ENST00000360817
10e
ENSE00001327036
chr12:
7171571-7171696
126
C1S_HUMAN
131-173
43
2
A:116-158 (gaps)
B:116-158
43
43
1.11b
ENST00000360817
11b
ENSE00001308911
chr12:
7172404-7172603
200
C1S_HUMAN
173-239
67
2
A:158-159
B:158-159
2
2
1.12b
ENST00000360817
12b
ENSE00001322783
chr12:
7173121-7173274
154
C1S_HUMAN
240-291
52
0
-
-
1.12g
ENST00000360817
12g
ENSE00001560603
chr12:
7173822-7173937
116
C1S_HUMAN
291-329
39
0
-
-
1.12j
ENST00000360817
12j
ENSE00001319673
chr12:
7174343-7174421
79
C1S_HUMAN
330-356
27
0
-
-
1.13c
ENST00000360817
13c
ENSE00001777929
chr12:
7174947-7175075
129
C1S_HUMAN
356-399
44
0
-
-
1.15b
ENST00000360817
15b
ENSE00001604953
chr12:
7175760-7175834
75
C1S_HUMAN
399-424
26
0
-
-
1.17c
ENST00000360817
17c
ENSE00001884879
chr12:
7177159-7178247
1089
C1S_HUMAN
424-688
265
0
-
-
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1nzia1 (A:1-117)
1b: SCOP_d1nzib1 (B:3-117)
2a: SCOP_d1nzia2 (A:118-159)
2b: SCOP_d1nzib2 (B:118-159)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
CUB-like
(21)
Superfamily
:
Spermadhesin, CUB domain
(10)
Family
:
Spermadhesin, CUB domain
(9)
Protein domain
:
Complement C1S component
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1nzia1
A:1-117
1b
d1nzib1
B:3-117
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Complement C1S component
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1nzia2
A:118-159
2b
d1nzib2
B:118-159
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1nziB02 (B:118-159)
1b: CATH_1nziA02 (A:118-159)
2a: CATH_1nziA01 (A:1-117)
2b: CATH_1nziB01 (B:3-117)
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)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
1a
1nziB02
B:118-159
1b
1nziA02
A:118-159
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.290, no name defined]
(10)
Human (Homo sapiens)
(7)
2a
1nziA01
A:1-117
2b
1nziB01
B:3-117
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_CUB_1nziB01 (B:3-112)
1b: PFAM_CUB_1nziB02 (B:3-112)
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)
Clan
:
CUB
(11)
Family
:
CUB
(11)
Homo sapiens (Human)
(8)
1a
CUB-1nziB01
B:3-112
1b
CUB-1nziB02
B:3-112
[
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