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1NYW
Asym. Unit
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Asym.Unit (153 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
THE HIGH RESOLUTION STRUCTURES OF RMLC FROM STREPTOCCUS SUIS IN COMPLEX WITH DTDP-D-GLUCOSE
Authors
:
C. Dong, L. L. Major, A. Allen, W. Blankenfeldt, D. Maskell, J. H. Naismi
Date
:
14 Feb 03 (Deposition) - 24 Jun 03 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Jelly Roll-Like Structure; Beta Sheet, Isomerase
(Keyword Search:
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Reference
:
C. Dong, L. L. Major, A. Allen, W. Blankenfeldt, D. Maskell, J. H. Naismith
High-Resolution Structures Of Rmlc From Streptococcus Suis In Complex With Substrate Analogs Locate The Active Site Of This Class Of Enzyme
Structure V. 11 715 2003
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALP... (DAUa)
1b: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALP... (DAUb)
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No.
Name
Count
Type
Full Name
1
DAU
2
Ligand/Ion
2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE
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Sites
(2, 2)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:33 , PHE A:36 , GLU A:38 , GLN B:61 , ASN B:63 , SER B:65 , ARG B:73 , HIS B:76 , GLU B:78 , LYS B:82 , ASN B:127 , TYR B:140 , TRP B:146 , LYS B:151 , HOH B:5024 , HOH B:5095 , HOH B:5110 , HOH B:5152 , HOH B:5180 , HOH B:5237
BINDING SITE FOR RESIDUE DAU B 5001
2
AC2
SOFTWARE
GLN A:61 , ASN A:63 , SER A:65 , ARG A:73 , HIS A:76 , GLU A:78 , LYS A:82 , ASN A:127 , TYR A:140 , TRP A:146 , HOH A:9005 , HOH A:9024 , HOH A:9027 , HOH A:9032 , HOH A:9036 , HOH A:9037 , HOH A:9047 , HOH A:9156 , HIS B:29 , ARG B:33 , PHE B:36 , GLU B:38 , HOH B:5060 , HOH B:5097
BINDING SITE FOR RESIDUE DAU A 9001
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1nywa_ (A:)
1b: SCOP_d1nywb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
dTDP-sugar isomerase
(26)
Protein domain
:
dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
(18)
Streptococcus suis [TaxId: 1307]
(4)
1a
d1nywa_
A:
1b
d1nywb_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1nywA00 (A:4-197)
1b: CATH_1nywB00 (B:3-197)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Streptococcus suis. Organism_taxid: 1307. Strain: serotype 2.
(3)
1a
1nywA00
A:4-197
1b
1nywB00
B:3-197
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_dTDP_sugar_isom_1nywB01 (B:14-189)
1b: PFAM_dTDP_sugar_isom_1nywB02 (B:14-189)
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Clan
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Cupin
(179)
Family
:
dTDP_sugar_isom
(11)
Streptococcus suis
(3)
1a
dTDP_sugar_isom-1nywB01
B:14-189
1b
dTDP_sugar_isom-1nywB02
B:14-189
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Asym.Unit (153 KB)
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