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1NXU
Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI HYPOTHETICAL OXIDOREDUCTASE YIAK NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER82.
Authors
:
F. Forouhar, I. Lee, J. Benach, K. Kulkarni, R. Xiao, T. B. Acton, R. Shastry, B. Rost, G. T. Montelione, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date
:
11 Feb 03 (Deposition) - 11 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hypothetical Protein, Oxidoreductase, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Forouhar, I. Lee, J. Benach, K. Kulkarni, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong
A Novel Nad-Binding Protein Revealed By The Crystal Structure Of 2, 3-Diketo-L-Gulonate Reductase (Yiak).
J. Biol. Chem. V. 279 13148 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 34)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
30
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:44 , ARG A:48 , TYR A:180 , GLY A:181 , HOH A:1021 , HOH A:1148 , HOH A:1164
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
MSE A:173 , SER A:174 , PHE A:178 , SER A:179 , MSE A:182 , HOH A:1007 , HOH A:1066 , HOH A:1067 , HOH A:1217 , LYS B:225
BINDING SITE FOR RESIDUE SO4 A 1002
3
AC3
SOFTWARE
LYS A:225 , MSE B:173 , SER B:174 , PHE B:178 , SER B:179 , HOH B:1092 , HOH B:1127 , HOH B:1166
BINDING SITE FOR RESIDUE SO4 B 1003
4
AC4
SOFTWARE
HIS B:44 , ARG B:48 , TYR B:180 , GLY B:181 , HOH B:1078 , HOH B:1081 , HOH B:1083 , HOH B:1131 , HOH B:1143
BINDING SITE FOR RESIDUE SO4 B 1004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1nxua_ (A:)
1b: SCOP_d1nxub_ (B:)
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(
)
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)
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)
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(
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
L-sulfolactate dehydrogenase-like
(12)
Superfamily
:
L-sulfolactate dehydrogenase-like
(12)
Family
:
L-sulfolactate dehydrogenase-like
(7)
Protein domain
:
2,3-diketogulonate oxidoreductase (YiaK)
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1nxua_
A:
1b
d1nxub_
B:
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1nxuB02 (B:65-176,B:222-270)
1b: CATH_1nxuA02 (A:65-164,A:222-270)
2a: CATH_1nxuA03 (A:181-220)
2b: CATH_1nxuB03 (B:178-220)
3a: CATH_1nxuA01 (A:2-64,A:317-332)
3b: CATH_1nxuB01 (B:2-64,B:318-333)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein S8; Chain: A, domain 1
(139)
Homologous Superfamily
:
Hypothetical oxidoreductase yiak; domain 2
(3)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1nxuB02
B:65-176,B:222-270
1b
1nxuA02
A:65-164,A:222-270
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
Hypothetical oxidoreductase yiak; domain 3
(2)
Escherichia coli. Organism_taxid: 562.
(2)
2a
1nxuA03
A:181-220
2b
1nxuB03
B:178-220
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Hypothetical Oxidoreductase Yiak; Chain: A, domain 1
(3)
Homologous Superfamily
:
[code=1.10.1530.10, no name defined]
(3)
Escherichia coli. Organism_taxid: 562.
(2)
3a
1nxuA01
A:2-64,A:317-332
3b
1nxuB01
B:2-64,B:318-333
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ldh_2_1nxuB01 (B:1-332)
1b: PFAM_Ldh_2_1nxuB02 (B:1-332)
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Clans
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Families
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(
)
Organisms
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)
(
)
Clan
:
no clan defined [family: Ldh_2]
(7)
Family
:
Ldh_2
(7)
Escherichia coli (strain K12)
(3)
1a
Ldh_2-1nxuB01
B:1-332
1b
Ldh_2-1nxuB02
B:1-332
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Asymmetric Unit 1
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Asym.Unit (125 KB)
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