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1NX9
Asym. Unit
Info
Asym.Unit (445 KB)
Biol.Unit 1 (437 KB)
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(1)
Title
:
ACETOBACTER TURBIDANS ALPHA-AMINO ACID ESTER HYDROLASE S205A MUTANT COMPLEXED WITH AMPICILLIN
Authors
:
T. R. M. Barends, J. J. Polderman-Tijmes, P. A. Jekel, D. B. Janssen, B. W
Date
:
10 Feb 03 (Deposition) - 09 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Alpha/Beta Hydrolase, Jellyroll, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. R. M. Barends, J. J. Polderman-Tijmes, P. A. Jekel, C. Williams, G. Wybenga, D. B. Janssen, B. W. Dijkstra
Acetobacter Turbidans {Alpha}-Amino Acid Ester Hydrolase: How A Single Mutation Improves An Antibiotic-Producing Enzyme.
J. Biol. Chem. V. 281 5804 2006
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHEN... (AICa)
1b: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHEN... (AICb)
1c: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHEN... (AICc)
1d: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHEN... (AICd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AIC
4
Ligand/Ion
(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID
2
GOL
4
Ligand/Ion
GLYCEROL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:112 , ARG A:117 , TYR A:154 , GLN A:257 , SER A:371 , TYR A:375 , HOH A:6111 , HOH A:6233 , HOH A:6359 , HOH A:6466 , HOH A:6536
BINDING SITE FOR RESIDUE AIC A 5001
2
AC2
SOFTWARE
TYR B:112 , ARG B:117 , TYR B:154 , GLN B:257 , SER B:371 , TYR B:375 , HOH B:6077 , HOH B:6155 , HOH B:6304 , HOH B:6381 , HOH B:6577
BINDING SITE FOR RESIDUE AIC B 5002
3
AC3
SOFTWARE
TYR C:112 , ARG C:117 , TYR C:154 , GLU C:207 , GLN C:257 , SER C:371 , TYR C:375 , HOH C:6082 , HOH C:6213 , HOH C:6267 , HOH C:6517
BINDING SITE FOR RESIDUE AIC C 5003
4
AC4
SOFTWARE
TYR D:112 , ARG D:117 , TYR D:154 , GLN D:257 , SER D:371 , TYR D:375 , HOH D:6089 , HOH D:6251 , HOH D:6273
BINDING SITE FOR RESIDUE AIC D 5004
5
AC5
SOFTWARE
ASP A:239 , ARG A:247 , GLU A:340 , HOH A:6138
BINDING SITE FOR RESIDUE GOL A 6002
6
AC6
SOFTWARE
ASP B:239 , ARG B:247 , GLY B:249 , GLU B:340 , HOH B:6104 , HOH B:6265 , HOH B:6557
BINDING SITE FOR RESIDUE GOL B 6004
7
AC7
SOFTWARE
ASP C:239 , ARG C:247 , GLU C:340 , HOH C:6151 , HOH C:6437
BINDING SITE FOR RESIDUE GOL C 6006
8
AC8
SOFTWARE
ASP D:239 , ARG D:247 , GLU D:340 , HOH D:6194
BINDING SITE FOR RESIDUE GOL D 6008
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1nx9a1 (A:435-666)
1b: SCOP_d1nx9b1 (B:435-666)
1c: SCOP_d1nx9c1 (C:435-666)
1d: SCOP_d1nx9d1 (D:435-666)
2a: SCOP_d1nx9a2 (A:50-434)
2b: SCOP_d1nx9b2 (B:50-434)
2c: SCOP_d1nx9c2 (C:50-434)
2d: SCOP_d1nx9d2 (D:50-434)
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Classes
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)
(
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(
)
Superfamilies
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)
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PepX C-terminal domain-like
(10)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Acetobacter pasteurianus [TaxId: 438]
(4)
1a
d1nx9a1
A:435-666
1b
d1nx9b1
B:435-666
1c
d1nx9c1
C:435-666
1d
d1nx9d1
D:435-666
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
PepX catalytic domain-like
(19)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Acetobacter pasteurianus [TaxId: 438]
(4)
2a
d1nx9a2
A:50-434
2b
d1nx9b2
B:50-434
2c
d1nx9c2
C:50-434
2d
d1nx9d2
D:50-434
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1nx9A01 (A:50-238,A:316-432)
1b: CATH_1nx9B01 (B:50-238,B:316-432)
1c: CATH_1nx9C01 (C:50-238,C:316-432)
1d: CATH_1nx9D01 (D:50-238,D:316-432)
2a: CATH_1nx9A02 (A:240-315)
2b: CATH_1nx9B02 (B:240-315)
2c: CATH_1nx9C02 (C:240-315)
2d: CATH_1nx9D02 (D:240-315)
3a: CATH_1nx9A03 (A:433-666)
3b: CATH_1nx9B03 (B:433-666)
3c: CATH_1nx9C03 (C:433-666)
3d: CATH_1nx9D03 (D:433-666)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Acetobacter pasteurianus. Organism_taxid: 438.
(1)
1a
1nx9A01
A:50-238,A:316-432
1b
1nx9B01
B:50-238,B:316-432
1c
1nx9C01
C:50-238,C:316-432
1d
1nx9D01
D:50-238,D:316-432
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Homologous Superfamily
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Acetobacter pasteurianus. Organism_taxid: 438.
(1)
2a
1nx9A02
A:240-315
2b
1nx9B02
B:240-315
2c
1nx9C02
C:240-315
2d
1nx9D02
D:240-315
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Acetobacter pasteurianus. Organism_taxid: 438.
(1)
3a
1nx9A03
A:433-666
3b
1nx9B03
B:433-666
3c
1nx9C03
C:433-666
3d
1nx9D03
D:433-666
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain D
Asymmetric Unit 1
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