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1NW9
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (54 KB)
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(1)
Title
:
STRUCTURE OF CASPASE-9 IN AN INHIBITORY COMPLEX WITH XIAP-BIR3
Authors
:
E. N. Shiozaki, J. Chai, D. J. Rigotti, S. J. Riedl, P. Li, S. M. Srinivasula, E. S. Alnemri, R. Fairman, Y. Shi
Date
:
05 Feb 03 (Deposition) - 25 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Caspase-9, Xiap, Caspase Inhibition, Caspase Activation, Dimerization, Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. N. Shiozaki, J. Chai, D. J. Rigotti, S. J. Riedl, P. Li, S. M. Srinivasula, E. S. Alnemri, R. Fairman, Y. Shi
Mechanism Of Xiap-Mediated Inhibition Of Caspase-9
Mol. Cell V. 11 519 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:300 , CYS A:303 , HIS A:320 , CYS A:327
BINDING SITE FOR RESIDUE ZN A 501
[
close Site info
]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_015420 (R173H, chain B, )
2: VAR_016131 (G176R, chain B, )
3: VAR_022053 (I185M, chain B, )
4: VAR_016132 (R192C, chain B, )
5: VAR_015421 (R221R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015420
R
173
H
CASP9_HUMAN
Polymorphism
2308950
B
R
173
H
2
UniProt
VAR_016131
G
176
R
CASP9_HUMAN
Polymorphism
2308949
B
G
176
R
3
UniProt
VAR_022053
I
185
M
CASP9_HUMAN
Polymorphism
9282624
B
I
185
M
4
UniProt
VAR_016132
R
192
C
CASP9_HUMAN
Polymorphism
2308939
B
R
192
C
5
UniProt
VAR_015421
Q
221
R
CASP9_HUMAN
Polymorphism
1052576
B
R
221
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: BIR_REPEAT_1 (-|-|A:265-330)
2: BIR_REPEAT_2 (-|-|A:268-331)
3: CASPASE_P20 (B:159-288)
4: CASPASE_HIS (B:224-238)
5: CASPASE_CYS (B:278-288)
6: CASPASE_P10 (B:333-395)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIR_REPEAT_1
PS01282
BIR repeat.
XIAP_HUMAN
26-93
163-230
265-330
1
-
-
A:265-330
2
BIR_REPEAT_2
PS50143
BIR repeat profile.
XIAP_HUMAN
29-94
166-231
268-331
1
-
-
A:268-331
3
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP9_HUMAN
159-291
1
B:159-288
4
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP9_HUMAN
224-238
1
B:224-238
5
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP9_HUMAN
278-289
1
B:278-288
6
CASPASE_P10
PS50207
Caspase family p10 domain profile.
CASP9_HUMAN
331-395
1
B:333-395
[
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]
Exons
(11, 11)
Info
All Exons
Exon 1.5b (B:140-140)
Exon 1.6 (B:140-151)
Exon 1.7b (B:152-210)
Exon 1.8 (B:211-240)
Exon 1.9c (B:241-288)
Exon 1.10 (B:316-350 (gaps))
Exon 1.11 (B:350-386)
Exon 1.12d (B:387-416)
Exon 2.3c (A:256-293)
Exon 2.4b (A:293-326)
Exon 2.5b (A:326-346)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.3a/1.5b
02: Boundary 1.5b/1.6
03: Boundary 1.6/1.7b
04: Boundary 1.7b/1.8
05: Boundary 1.8/1.9c
06: Boundary 1.9c/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12d
09: Boundary 1.12d/-
10: Boundary 2.2a/2.3c
11: Boundary 2.3c/2.4b
12: Boundary 2.4b/2.5b
13: Boundary 2.5b/2.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000333868
3a
ENSE00002180383
chr1:
15850790-15850564
227
CASP9_HUMAN
1-44
44
0
-
-
1.5b
ENST00000333868
5b
ENSE00001801656
chr1:
15844890-15844605
286
CASP9_HUMAN
45-140
96
1
B:140-140
1
1.6
ENST00000333868
6
ENSE00001749155
chr1:
15834402-15834368
35
CASP9_HUMAN
140-151
12
1
B:140-151
12
1.7b
ENST00000333868
7b
ENSE00001750610
chr1:
15833570-15833394
177
CASP9_HUMAN
152-210
59
1
B:152-210
59
1.8
ENST00000333868
8
ENSE00000906102
chr1:
15832574-15832485
90
CASP9_HUMAN
211-240
30
1
B:211-240
30
1.9c
ENST00000333868
9c
ENSE00002163370
chr1:
15831253-15831106
148
CASP9_HUMAN
241-290
50
1
B:241-288
48
1.10
ENST00000333868
10
ENSE00002200581
chr1:
15821947-15821768
180
CASP9_HUMAN
290-350
61
1
B:316-350 (gaps)
35
1.11
ENST00000333868
11
ENSE00001591302
chr1:
15820496-15820387
110
CASP9_HUMAN
350-386
37
1
B:350-386
37
1.12d
ENST00000333868
12d
ENSE00001938542
chr1:
15819530-15818765
766
CASP9_HUMAN
387-416
30
1
B:387-416
30
2.2a
ENST00000371199
2a
ENSE00001810722
X:122993877-122994143
267
XIAP_HUMAN
-
0
0
-
-
2.3c
ENST00000371199
3c
ENSE00002176074
X:123019481-123020389
909
XIAP_HUMAN
1-293
293
1
A:256-293
38
2.4b
ENST00000371199
4b
ENSE00001649641
X:123022469-123022568
100
XIAP_HUMAN
293-326
34
1
A:293-326
34
2.5b
ENST00000371199
5b
ENSE00001630752
X:123025088-123025166
79
XIAP_HUMAN
326-352
27
1
A:326-346
21
2.6
ENST00000371199
6
ENSE00001714518
X:123026581-123026623
43
XIAP_HUMAN
353-367
15
0
-
-
2.7b
ENST00000371199
7b
ENSE00001653318
X:123034343-123034543
201
XIAP_HUMAN
367-434
68
0
-
-
2.8e
ENST00000371199
8e
ENSE00001454620
X:123040838-123047829
6992
XIAP_HUMAN
434-497
64
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1nw9b_ (B:)
2a: SCOP_d1nw9a_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Caspase-like
(92)
Superfamily
:
Caspase-like
(92)
Family
:
Caspase catalytic domain
(76)
Protein domain
:
Caspase-9
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1nw9b_
B:
Class
:
Small proteins
(3458)
Fold
:
Inhibitor of apoptosis (IAP) repeat
(71)
Superfamily
:
Inhibitor of apoptosis (IAP) repeat
(71)
Family
:
Inhibitor of apoptosis (IAP) repeat
(70)
Protein domain
:
BIR domains of XIAP
(15)
Human (Homo sapiens) [TaxId: 9606]
(15)
2a
d1nw9a_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1nw9B00 (B:140-416)
2a: CATH_1nw9A00 (A:256-346)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
1a
1nw9B00
B:140-416
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Homologous Superfamily
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Human (Homo sapiens)
(35)
2a
1nw9A00
A:256-346
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_BIR_1nw9A01 (A:268-331)
2a: PFAM_Peptidase_C14_1nw9B01 (B:161-413)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
BIR-like
(25)
Family
:
BIR
(25)
Homo sapiens (Human)
(24)
1a
BIR-1nw9A01
A:268-331
Clan
:
Peptidase_CD
(53)
Family
:
Peptidase_C14
(53)
Homo sapiens (Human)
(51)
2a
Peptidase_C14-1nw9B01
B:161-413
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