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1NW2
Biol. Unit 2
Info
Asym.Unit (153 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (147 KB)
Biol.Unit 4 (148 KB)
Biol.Unit 5 (147 KB)
Biol.Unit 6 (147 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE MUTANT R82E OF THIOREDOXIN FROM ALICYCLOBACILLUS ACIDOCALDARIUS
Authors
:
S. Bartolucci, G. De Simone, S. Galdiero, R. Improta, V. Menchise, C. P E. Pedone, M. Saviano
Date
:
05 Feb 03 (Deposition) - 05 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (1x)
Biol. Unit 4: A,B,C,D,E,F,G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Biol. Unit 6: A,B,C,D,E,F,G,H (1x)
Keywords
:
Thermostability, Thioredoxin, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Bartolucci, G. De Simone, S. Galdiero, R. Improta, V. Menchise, C. Pedone, E. Pedone, M. Saviano
An Integrated Structural And Computational Study Of The Thermostability Of Two Thioredoxin Mutants From Alicyclobacillus Acidocaldarius
J. Bacteriol. V. 185 4285 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CAC
-1
Ligand/Ion
CACODYLATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC7 (SOFTWARE)
12: BC8 (SOFTWARE)
13: BC9 (SOFTWARE)
14: CC1 (SOFTWARE)
15: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS D:46 , GLU D:97 , CAC D:5002 , ZN D:6004 , ZN D:6009 , HOH D:6027 , GLU H:62 , HOH H:7025
BINDING SITE FOR RESIDUE CAC D 5001
02
AC2
SOFTWARE
HIS D:46 , GLU D:97 , CAC D:5001 , ZN D:6004 , ZN D:6009 , HOH D:6040 , HOH D:6092 , GLU H:62
BINDING SITE FOR RESIDUE CAC D 5002
03
AC4
SOFTWARE
HIS B:46 , GLU B:97 , ACT B:7003 , GLU H:94
BINDING SITE FOR RESIDUE ZN B 6002
04
AC7
SOFTWARE
HIS E:46 , GLU E:97 , ACT E:7005 , HOH E:7052
BINDING SITE FOR RESIDUE ZN E 6005
05
AC8
SOFTWARE
GLU D:94 , HIS F:46 , GLU F:97 , ACT F:7006
BINDING SITE FOR RESIDUE ZN F 6006
06
AC9
SOFTWARE
HIS G:46 , GLU G:97 , ACT G:7007 , HOH G:7008
BINDING SITE FOR RESIDUE ZN G 6007
07
BC1
SOFTWARE
ACT B:7009 , HIS H:46 , GLU H:97 , ACT H:7008
BINDING SITE FOR RESIDUE ZN H 6008
08
BC2
SOFTWARE
CAC D:5001 , CAC D:5002 , GLU H:62
BINDING SITE FOR RESIDUE ZN D 6009
09
BC4
SOFTWARE
ALA A:45 , LYS A:93 , ZN A:6001 , ACT A:7001 , HOH A:7074 , ARG G:33
BINDING SITE FOR RESIDUE ACT A 7002
10
BC5
SOFTWARE
HIS B:46 , LYS B:49 , GLU B:97 , ALA B:101 , LEU B:104 , ZN B:6002 , LYS H:93 , GLU H:94
BINDING SITE FOR RESIDUE ACT B 7003
11
BC7
SOFTWARE
HIS E:46 , LYS E:49 , GLU E:97 , ALA E:101 , LEU E:104 , ZN E:6005 , HOH E:7052
BINDING SITE FOR RESIDUE ACT E 7005
12
BC8
SOFTWARE
LYS D:93 , GLU D:94 , HIS F:46 , GLU F:97 , ALA F:101 , ZN F:6006 , HOH F:7041
BINDING SITE FOR RESIDUE ACT F 7006
13
BC9
SOFTWARE
HIS G:46 , GLU G:97 , ZN G:6007
BINDING SITE FOR RESIDUE ACT G 7007
14
CC1
SOFTWARE
GLU H:97 , ALA H:101 , LEU H:104 , ZN H:6008
BINDING SITE FOR RESIDUE ACT H 7008
15
CC2
SOFTWARE
ZN H:6008
BINDING SITE FOR RESIDUE ACT B 7009
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (E:1-105,F:1-105,G:1-105,H:1-105)
2: THIOREDOXIN_1 (E:21-39,F:21-39,G:21-39,H:21-39)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
THIO_ALIAC
1-105
4
-
-
-
-
E:1-105
F:1-105
G:1-105
H:1-105
2
THIOREDOXIN_1
PS00194
Thioredoxin family active site.
THIO_ALIAC
21-39
4
-
-
-
-
E:21-39
F:21-39
G:21-39
H:21-39
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1nw2a_ (A:)
1b: SCOP_d1nw2b_ (B:)
1c: SCOP_d1nw2c_ (C:)
1d: SCOP_d1nw2d_ (D:)
1e: SCOP_d1nw2e_ (E:)
1f: SCOP_d1nw2f_ (F:)
1g: SCOP_d1nw2g_ (G:)
1h: SCOP_d1nw2h_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Thioltransferase
(167)
Protein domain
:
Thioredoxin
(106)
Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
(4)
1a
d1nw2a_
A:
1b
d1nw2b_
B:
1c
d1nw2c_
C:
1d
d1nw2d_
D:
1e
d1nw2e_
E:
1f
d1nw2f_
F:
1g
d1nw2g_
G:
1h
d1nw2h_
H:
[
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]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1nw2A00 (A:1-105)
1b: CATH_1nw2G00 (G:1-105)
1c: CATH_1nw2H00 (H:1-105)
1d: CATH_1nw2B00 (B:1-105)
1e: CATH_1nw2C00 (C:1-105)
1f: CATH_1nw2D00 (D:1-105)
1g: CATH_1nw2E00 (E:1-105)
1h: CATH_1nw2F00 (F:1-105)
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)
(
)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Alicyclobacillus acidocaldarius. Organism_taxid: 405212.
(3)
1a
1nw2A00
A:1-105
1b
1nw2G00
G:1-105
1c
1nw2H00
H:1-105
1d
1nw2B00
B:1-105
1e
1nw2C00
C:1-105
1f
1nw2D00
D:1-105
1g
1nw2E00
E:1-105
1h
1nw2F00
F:1-105
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Thioredoxin_1nw2H01 (H:1-103)
1b: PFAM_Thioredoxin_1nw2H02 (H:1-103)
1c: PFAM_Thioredoxin_1nw2H03 (H:1-103)
1d: PFAM_Thioredoxin_1nw2H04 (H:1-103)
1e: PFAM_Thioredoxin_1nw2H05 (H:1-103)
1f: PFAM_Thioredoxin_1nw2H06 (H:1-103)
1g: PFAM_Thioredoxin_1nw2H07 (H:1-103)
1h: PFAM_Thioredoxin_1nw2H08 (H:1-103)
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Clans
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)
(
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)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
Thioredoxin
(82)
Alicyclobacillus acidocaldarius (Bacillus acidocaldarius)
(3)
1a
Thioredoxin-1nw2H01
H:1-103
1b
Thioredoxin-1nw2H02
H:1-103
1c
Thioredoxin-1nw2H03
H:1-103
1d
Thioredoxin-1nw2H04
H:1-103
1e
Thioredoxin-1nw2H05
H:1-103
1f
Thioredoxin-1nw2H06
H:1-103
1g
Thioredoxin-1nw2H07
H:1-103
1h
Thioredoxin-1nw2H08
H:1-103
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Asymmetric Unit 1
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