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1NVJ
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (93 KB)
Biol.Unit 3 (83 KB)
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(1)
Title
:
DELETION MUTANT (DELTA 141) OF MOLYBDOPTERIN SYNTHASE
Authors
:
M. J. Rudolph, M. M. Wuebbens, O. Turque, K. V. Rajagopalan, H. Schindel
Date
:
03 Feb 03 (Deposition) - 06 May 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Deletion Mutant, Molybdenum Cofactor Biosynthesis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Rudolph, M. M. Wuebbens, O. Turque, K. V. Rajagopalan, H. Schindelin
Structural Studies Of Molybdopterin Synthase Provide Insights Into Its Catalytic Mechanism
J. Biol. Chem. V. 278 14514 2003
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
1f: FORMIC ACID (FMTf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMT
6
Ligand/Ion
FORMIC ACID
2
GOL
8
Ligand/Ion
GLYCEROL
3
NA
4
Ligand/Ion
SODIUM ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH C:143 , HOH C:144 , HOH C:158 , GLY D:91 , NA D:142 , HOH D:156 , HOH D:158
BINDING SITE FOR RESIDUE NA D 141
02
AC2
SOFTWARE
HOH C:158 , HOH C:177 , NA D:141 , HOH D:156 , HOH D:158 , HOH D:199
BINDING SITE FOR RESIDUE NA D 142
03
AC3
SOFTWARE
HOH A:161 , HOH A:175 , HOH A:176 , GLY B:91 , HOH B:169
BINDING SITE FOR RESIDUE NA B 141
04
AC4
SOFTWARE
HOH A:193 , HOH E:154 , GLY F:91 , HOH F:168 , HOH F:183
BINDING SITE FOR RESIDUE NA F 141
05
AC5
SOFTWARE
SER A:105 , PHE A:108 , GLN B:112 , ASP B:116 , HOH B:147 , ARG C:73 , TRP C:74
BINDING SITE FOR RESIDUE GOL B 142
06
AC6
SOFTWARE
GLN C:112 , ASP C:116 , HOH C:187 , HOH C:212 , SER D:105 , PHE D:108 , ARG E:73 , TRP E:74
BINDING SITE FOR RESIDUE GOL C 141
07
AC7
SOFTWARE
ARG A:39 , HIS B:103 , ARG B:104 , SER B:105
BINDING SITE FOR RESIDUE GOL B 143
08
AC8
SOFTWARE
GLU A:27 , ASP A:28 , PRO A:75 , SER A:101 , ALA A:102
BINDING SITE FOR RESIDUE GOL A 141
09
AC9
SOFTWARE
GLY D:9 , GLN D:11 , PHE D:13 , ILE D:82 , ARG D:84 , HOH D:161
BINDING SITE FOR RESIDUE GOL D 143
10
BC1
SOFTWARE
GLU D:27 , ASP D:28 , PRO D:75 , GLY D:77 , SER D:101 , ALA D:102
BINDING SITE FOR RESIDUE GOL D 144
11
BC2
SOFTWARE
GLU A:24 , ARG A:78 , PRO E:20 , GLU E:24
BINDING SITE FOR RESIDUE GOL A 142
12
BC3
SOFTWARE
VAL B:7 , TYR D:55 , TRP D:125 , TRP D:136 , VAL D:137
BINDING SITE FOR RESIDUE GOL D 145
13
BC4
SOFTWARE
GLY C:36 , ARG C:39 , MET C:115 , HOH C:214 , ARG D:104 , ASN E:72
BINDING SITE FOR RESIDUE FMT C 142
14
BC5
SOFTWARE
ARG A:104 , HOH A:155 , PHE B:34 , GLY B:36 , ARG B:39
BINDING SITE FOR RESIDUE FMT A 143
15
BC6
SOFTWARE
ARG E:104 , GLY F:36 , ARG F:39 , LYS F:119 , HOH F:148
BINDING SITE FOR RESIDUE FMT F 142
16
BC7
SOFTWARE
PHE E:34 , GLY E:36 , ARG E:39 , ARG F:104
BINDING SITE FOR RESIDUE FMT E 141
17
BC8
SOFTWARE
HIS B:83 , LYS B:119 , PHE B:124
BINDING SITE FOR RESIDUE FMT B 144
18
BC9
SOFTWARE
PHE D:34 , GLY D:36 , ARG D:39 , LYS D:119 , HOH D:163
BINDING SITE FOR RESIDUE FMT D 146
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1nvja_ (A:)
1b: SCOP_d1nvjb_ (B:)
1c: SCOP_d1nvjc_ (C:)
1d: SCOP_d1nvjd_ (D:)
1e: SCOP_d1nvje_ (E:)
1f: SCOP_d1nvjf_ (F:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
Molybdopterin synthase subunit MoaE
(10)
Family
:
Molybdopterin synthase subunit MoaE
(5)
Protein domain
:
Molybdopterin synthase subunit MoaE
(5)
Escherichia coli [TaxId: 562]
(5)
1a
d1nvja_
A:
1b
d1nvjb_
B:
1c
d1nvjc_
C:
1d
d1nvjd_
D:
1e
d1nvje_
E:
1f
d1nvjf_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1nvjB00 (B:2-127)
1b: CATH_1nvjD00 (D:2-140)
1c: CATH_1nvjC00 (C:2-128)
1d: CATH_1nvjF00 (F:2-127)
1e: CATH_1nvjA00 (A:2-127)
1f: CATH_1nvjE00 (E:2-126)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aldehyde Oxidoreductase; domain 3
(111)
Homologous Superfamily
:
[code=3.90.1170.40, no name defined]
(6)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1nvjB00
B:2-127
1b
1nvjD00
D:2-140
1c
1nvjC00
C:2-128
1d
1nvjF00
F:2-127
1e
1nvjA00
A:2-127
1f
1nvjE00
E:2-126
[
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_MoaE_1nvjF01 (F:5-122)
1b: PFAM_MoaE_1nvjF02 (F:5-122)
1c: PFAM_MoaE_1nvjF03 (F:5-122)
1d: PFAM_MoaE_1nvjF04 (F:5-122)
1e: PFAM_MoaE_1nvjF05 (F:5-122)
1f: PFAM_MoaE_1nvjF06 (F:5-122)
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Clan
:
no clan defined [family: MoaE]
(7)
Family
:
MoaE
(7)
Escherichia coli (strain K12)
(2)
1a
MoaE-1nvjF01
F:5-122
1b
MoaE-1nvjF02
F:5-122
1c
MoaE-1nvjF03
F:5-122
1d
MoaE-1nvjF04
F:5-122
1e
MoaE-1nvjF05
F:5-122
1f
MoaE-1nvjF06
F:5-122
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (264 KB)
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