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1NV7
Biol. Unit 1
Info
Asym.Unit (121 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (224 KB)
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(1)
Title
:
FRUCTOSE-1,6-BISPHOSPHATASE COMPLEX WITH AMP, MAGNESIUM, FRUCTOSE-6-PHOSPHATE, PHOSPHATE AND THALLIUM (20 MM)
Authors
:
J. Choe, C. V. Iancu, H. J. Fromm, R. B. Honzatko
Date
:
02 Feb 03 (Deposition) - 08 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Bisphosphatase, Allosteric Enzymes, Gluconeogenesis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Y. Choe, S. W. Nelson, H. J. Fromm, R. B. Honzatko
Interaction Of Tl+ With Product Complexes Of Fructose-1, 6-Bisphosphatase
J. Biol. Chem. V. 278 16008 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
2a: FRUCTOSE-6-PHOSPHATE (F6Pa)
2b: FRUCTOSE-6-PHOSPHATE (F6Pb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
5a: THALLIUM (I) ION (TLa)
5b: THALLIUM (I) ION (TLb)
5c: THALLIUM (I) ION (TLc)
5d: THALLIUM (I) ION (TLd)
5e: THALLIUM (I) ION (TLe)
5f: THALLIUM (I) ION (TLf)
5g: THALLIUM (I) ION (TLg)
5h: THALLIUM (I) ION (TLh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
F6P
2
Ligand/Ion
FRUCTOSE-6-PHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
PO4
2
Ligand/Ion
PHOSPHATE ION
5
TL
-1
Ligand/Ion
THALLIUM (I) ION
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:1121 , GLY A:1122 , ASN A:1212 , TYR A:1215 , TYR A:1244 , GLY A:1246 , SER A:1247 , MET A:1248 , TYR A:1264 , LYS A:1274 , GLU A:1280 , TL A:3351 , PO4 A:3434 , HOH A:5027 , HOH A:5045 , HOH A:5112 , HOH A:5144 , HOH A:5257 , ARG B:2243
BINDING SITE FOR RESIDUE F6P A 3336
02
AC2
SOFTWARE
ARG A:1243 , ASP B:2121 , GLY B:2122 , ASN B:2212 , TYR B:2215 , TYR B:2244 , GLY B:2246 , SER B:2247 , MET B:2248 , TYR B:2264 , LYS B:2274 , GLU B:2280 , MG B:4341 , TL B:4351 , PO4 B:4434 , HOH B:5014 , HOH B:5051 , HOH B:5111 , HOH B:5120 , HOH B:5178
BINDING SITE FOR RESIDUE F6P B 4336
03
AC3
SOFTWARE
GLU A:1097 , ASP A:1118 , ASP A:1121 , GLU A:1280 , PO4 A:3434
BINDING SITE FOR RESIDUE MG A 3341
04
AC4
SOFTWARE
GLU B:2097 , ASP B:2118 , ASP B:2121 , GLU B:2280 , F6P B:4336 , TL B:4352 , PO4 B:4434
BINDING SITE FOR RESIDUE MG B 4341
05
AC5
SOFTWARE
GLU A:1097 , ASP A:1118 , LEU A:1120 , ASP A:1121 , GLY A:1122 , SER A:1123 , F6P A:3336 , MG A:3341 , TL A:3352 , TL A:3353 , TL A:3354 , HOH A:5343
BINDING SITE FOR RESIDUE PO4 A 3434
06
AC6
SOFTWARE
GLU B:2097 , ASP B:2118 , LEU B:2120 , ASP B:2121 , GLY B:2122 , SER B:2123 , GLU B:2280 , F6P B:4336 , MG B:4341 , TL B:4351 , TL B:4352 , TL B:4353 , TL B:4354
BINDING SITE FOR RESIDUE PO4 B 4434
07
AC7
SOFTWARE
VAL A:1017 , GLU A:1020 , GLY A:1021 , THR A:1027 , GLY A:1028 , GLU A:1029 , MET A:1030 , THR A:1031 , LYS A:1112 , TYR A:1113 , VAL A:1160 , MET A:1177 , HOH A:5070 , HOH A:5199 , HOH A:5244 , HOH A:5410
BINDING SITE FOR RESIDUE AMP A 3337
08
AC8
SOFTWARE
LYS A:1274 , GLU A:1280 , F6P A:3336 , TL A:3352
BINDING SITE FOR RESIDUE TL A 3351
09
AC9
SOFTWARE
GLU A:1097 , TL A:3351 , PO4 A:3434
BINDING SITE FOR RESIDUE TL A 3352
10
BC1
SOFTWARE
GLU A:1097 , GLU A:1098 , TL A:3354 , PO4 A:3434
BINDING SITE FOR RESIDUE TL A 3353
11
BC2
SOFTWARE
GLU A:1097 , GLU A:1098 , ASP A:1118 , LEU A:1120 , TL A:3353 , PO4 A:3434
BINDING SITE FOR RESIDUE TL A 3354
12
BC3
SOFTWARE
VAL B:2017 , GLU B:2020 , GLY B:2021 , THR B:2027 , GLY B:2028 , GLU B:2029 , MET B:2030 , THR B:2031 , LYS B:2112 , TYR B:2113 , ARG B:2140 , VAL B:2160 , MET B:2177 , HOH B:5127 , HOH B:5133 , HOH B:5259
BINDING SITE FOR RESIDUE AMP B 4337
13
BC4
SOFTWARE
GLU B:2280 , F6P B:4336 , TL B:4352 , PO4 B:4434
BINDING SITE FOR RESIDUE TL B 4351
14
BC5
SOFTWARE
GLU B:2097 , ARG B:2276 , GLU B:2280 , MG B:4341 , TL B:4351 , PO4 B:4434
BINDING SITE FOR RESIDUE TL B 4352
15
BC6
SOFTWARE
GLU B:2097 , GLU B:2098 , TL B:4354 , PO4 B:4434
BINDING SITE FOR RESIDUE TL B 4353
16
BC7
SOFTWARE
GLU B:2097 , GLU B:2098 , ASP B:2118 , LEU B:2120 , TL B:4353 , PO4 B:4434
BINDING SITE FOR RESIDUE TL B 4354
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FBPASE (A:1273-1285,B:2273-2285)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FBPASE
PS00124
Fructose-1-6-bisphosphatase active site.
F16P1_PIG
274-286
2
A:1273-1285
B:2273-2285
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1nv7a_ (A:)
1b: SCOP_d1nv7b_ (B:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
Fructose-1,6-bisphosphatase
(75)
Pig (Sus scrofa) [TaxId: 9823]
(65)
1a
d1nv7a_
A:
1b
d1nv7b_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1nv7A01 (A:1009-1199)
1b: CATH_1nv7B01 (B:2009-2199)
2a: CATH_1nv7A02 (A:1200-1334)
2b: CATH_1nv7B02 (B:2200-2334)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Pig (Sus scrofa)
(54)
1a
1nv7A01
A:1009-1199
1b
1nv7B01
B:2009-2199
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Pig (Sus scrofa)
(54)
2a
1nv7A02
A:1200-1334
2b
1nv7B02
B:2200-2334
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_FBPase_1nv7B01 (B:2011-2334)
1b: PFAM_FBPase_1nv7B02 (B:2011-2334)
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)
(
)
Clan
:
Phospoesterase
(42)
Family
:
FBPase
(32)
Sus scrofa (Pig)
(19)
1a
FBPase-1nv7B01
B:2011-2334
1b
FBPase-1nv7B02
B:2011-2334
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Asymmetric Unit 1
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