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1NUH
Biol. Unit 1
Info
Asym.Unit (99 KB)
Biol.Unit 1 (183 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH 5-PHOSPHOARABINONATE
Authors
:
C. Davies
Date
:
31 Jan 03 (Deposition) - 11 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Aldose-Ketose Isomerase, Glycolysis Enzyme, Neurotrophic Growth Factor, Cytokine, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Davies, H. Muirhead, J. Chirgwin
The Structure Of Human Phosphoglucose Isomerase Complexed With A Transition-State Analogue.
Acta Crystallogr. , Sect. D V. 59 1111 2003
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: 5-PHOSPHOARABINONIC ACID (PA5a)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PA5
2
Ligand/Ion
5-PHOSPHOARABINONIC ACID
2
SO4
12
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:368 , ARG A:369
BINDING SITE FOR RESIDUE SO4 A 558
2
AC2
SOFTWARE
ARG A:27 , ASN A:46 , HIS A:47
BINDING SITE FOR RESIDUE SO4 A 559
3
AC3
SOFTWARE
ARG A:136 , HOH A:626
BINDING SITE FOR RESIDUE SO4 A 560
4
AC4
SOFTWARE
TRP A:140 , LYS A:141 , LYS A:240
BINDING SITE FOR RESIDUE SO4 A 561
5
AC5
SOFTWARE
TYR A:173 , LYS A:480 , THR A:482 , HOH A:670
BINDING SITE FOR RESIDUE SO4 A 562
6
AC6
SOFTWARE
THR A:149 , ARG A:179
BINDING SITE FOR RESIDUE SO4 A 563
7
AC7
SOFTWARE
ILE A:156 , GLY A:157 , GLY A:158 , SER A:159 , SER A:209 , LYS A:210 , THR A:211 , THR A:214 , GLN A:353 , GLU A:357 , HIS A:388 , LYS A:518 , HOH A:566 , HOH A:601
BINDING SITE FOR RESIDUE PA5 A 564
[
close Site info
]
SAPs(SNPs)/Variants
(25, 50)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_002516 (T4I, chain A, )
02: VAR_002517 (H19P, chain A, )
03: VAR_002518 (R74G, chain A, )
04: VAR_002519 (R82W, chain A, )
05: VAR_002521 (V100M, chain A, )
06: VAR_002520 (G158S, chain A, )
07: VAR_002522 (T194I, chain A, )
08: VAR_018816 (I207T, chain A, )
09: VAR_002523 (T223M, chain A, )
10: VAR_002524 (R272H, chain A, )
11: VAR_002525 (S277L, chain A, )
12: VAR_002526 (A299P, chain A, )
13: VAR_033943 (R307H, chain A, )
14: VAR_002527 (L338P, chain A, )
15: VAR_002528 (Q342R, chain A, )
16: VAR_002529 (R346C, chain A, )
17: VAR_002530 (R346H, chain A, )
18: VAR_002531 (T374R, chain A, )
19: VAR_002532 (H388R, chain A, )
20: VAR_002533 (R471H, chain A, )
21: VAR_002534 (L486F, chain A, )
22: VAR_002535 (E494K, chain A, )
23: VAR_002536 (L516V, chain A, )
24: VAR_002537 (I524T, chain A, )
25: VAR_002538 (D538N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_002516
T
5
I
G6PI_HUMAN
Disease (HA-GPID)
---
A
T
4
I
02
UniProt
VAR_002517
H
20
P
G6PI_HUMAN
Disease (HA-GPID)
---
A
H
19
P
03
UniProt
VAR_002518
R
75
G
G6PI_HUMAN
Disease (HA-GPID)
---
A
R
74
G
04
UniProt
VAR_002519
R
83
W
G6PI_HUMAN
Disease (HA-GPID)
---
A
R
82
W
05
UniProt
VAR_002521
V
101
M
G6PI_HUMAN
Disease (HA-GPID)
---
A
V
100
M
06
UniProt
VAR_002520
G
159
S
G6PI_HUMAN
Disease (HA-GPID)
---
A
G
158
S
07
UniProt
VAR_002522
T
195
I
G6PI_HUMAN
Disease (HA-GPID)
---
A
T
194
I
08
UniProt
VAR_018816
I
208
T
G6PI_HUMAN
Polymorphism
8191371
A
I
207
T
09
UniProt
VAR_002523
T
224
M
G6PI_HUMAN
Disease (HA-GPID)
61754634
A
T
223
M
10
UniProt
VAR_002524
R
273
H
G6PI_HUMAN
Disease (HA-GPID)
---
A
R
272
H
11
UniProt
VAR_002525
S
278
L
G6PI_HUMAN
Disease (HA-GPID)
34306618
A
S
277
L
12
UniProt
VAR_002526
A
300
P
G6PI_HUMAN
Disease (HA-GPID)
---
A
A
299
P
13
UniProt
VAR_033943
R
308
H
G6PI_HUMAN
Polymorphism
2230294
A
R
307
H
14
UniProt
VAR_002527
L
339
P
G6PI_HUMAN
Disease (HA-GPID)
---
A
L
338
P
15
UniProt
VAR_002528
Q
343
R
G6PI_HUMAN
Disease (HA-GPID)
---
A
Q
342
R
16
UniProt
VAR_002529
R
347
C
G6PI_HUMAN
Disease (HA-GPID)
---
A
R
346
C
17
UniProt
VAR_002530
R
347
H
G6PI_HUMAN
Disease (HA-GPID)
---
A
R
346
H
18
UniProt
VAR_002531
T
375
R
G6PI_HUMAN
Disease (HA-GPID)
---
A
T
374
R
19
UniProt
VAR_002532
H
389
R
G6PI_HUMAN
Disease (HA-GPID)
---
A
H
388
R
20
UniProt
VAR_002533
R
472
H
G6PI_HUMAN
Disease (HA-GPID)
---
A
R
471
H
21
UniProt
VAR_002534
L
487
F
G6PI_HUMAN
Disease (HA-GPID)
---
A
L
486
F
22
UniProt
VAR_002535
E
495
K
G6PI_HUMAN
Disease (HA-GPID)
---
A
E
494
K
23
UniProt
VAR_002536
L
517
V
G6PI_HUMAN
Disease (HA-GPID)
---
A
L
516
V
24
UniProt
VAR_002537
I
525
T
G6PI_HUMAN
Disease (HA-GPID)
---
A
I
524
T
25
UniProt
VAR_002538
D
539
N
G6PI_HUMAN
Disease (HA-GPID)
---
A
D
538
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: P_GLUCOSE_ISOMERASE_3 (A:6-552)
2: P_GLUCOSE_ISOMERASE_1 (A:267-280)
3: P_GLUCOSE_ISOMERASE_2 (A:501-518)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P_GLUCOSE_ISOMERASE_3
PS51463
Glucose-6-phosphate isomerase family profile.
G6PI_HUMAN
7-553
2
A:6-552
2
P_GLUCOSE_ISOMERASE_1
PS00765
Phosphoglucose isomerase signature 1.
G6PI_HUMAN
268-281
2
A:267-280
3
P_GLUCOSE_ISOMERASE_2
PS00174
Phosphoglucose isomerase signature 2.
G6PI_HUMAN
502-519
2
A:501-518
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1nuha_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
Phosphoglucose isomerase, PGI
(37)
Protein domain
:
Phosphoglucose isomerase, PGI
(24)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1nuha_
A:
[
close SCOP info
]
CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1nuhA02 (A:99-293)
1b: CATH_1nuhA01 (A:1-98,A:294-514)
2a: CATH_1nuhA03 (A:515-555)
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(
)
(
)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
Human (Homo sapiens)
(5)
1a
1nuhA02
A:99-293
1b
1nuhA01
A:1-98,A:294-514
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Phosphoglucose isomerase, C-terminal domain
(32)
Homologous Superfamily
:
[code=1.10.1390.10, no name defined]
(32)
Human (Homo sapiens)
(5)
2a
1nuhA03
A:515-555
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PGI_1nuhA01 (A:53-545)
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SIS
(53)
Family
:
PGI
(23)
Homo sapiens (Human)
(3)
1a
PGI-1nuhA01
A:53-545
[
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]
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