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1NUF
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (111 KB)
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(1)
Title
:
ROLE OF CALCIUM IONS IN THE ACTIVATION AND ACTIVITY OF THE TRANSGLUTAMINASE 3 ENZYME
Authors
:
B. Ahvazi
Date
:
31 Jan 03 (Deposition) - 22 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transglutaminase 3, X-Ray Crystallography, Metalloenzyme, Calcium Ion, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ahvazi, K. M. Boeshans, W. Idler, U. Baxa, P. M. Steinert
Roles Of Calcium Ions In The Activation And Activity Of The Transglutaminase 3 Enzyme
J. Biol. Chem. V. 278 23834 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 9)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
4
Ligand/Ion
BROMIDE ION
2
CA
1
Ligand/Ion
CALCIUM ION
3
CL
4
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:430 , GLN A:669
BINDING SITE FOR RESIDUE CL A 701
2
AC2
SOFTWARE
ARG A:169 , ARG A:587 , ILE A:590
BINDING SITE FOR RESIDUE BR A 702
3
AC3
SOFTWARE
ASP A:183 , SER A:186
BINDING SITE FOR RESIDUE CL A 703
4
AC4
SOFTWARE
ARG A:291
BINDING SITE FOR RESIDUE CL A 705
5
AC5
SOFTWARE
ALA A:221 , ASN A:224 , ASN A:226 , ASP A:227 , ASN A:229
BINDING SITE FOR RESIDUE CA A 706
6
AC6
SOFTWARE
TRP A:236
BINDING SITE FOR RESIDUE BR A 707
7
AC7
SOFTWARE
ASN A:226 , ASP A:227
BINDING SITE FOR RESIDUE BR A 708
8
AC8
SOFTWARE
LEU A:638
BINDING SITE FOR RESIDUE BR A 709
[
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]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040067 (T12K, chain A, )
2: VAR_040068 (I162L, chain A, )
3: VAR_040069 (S248N, chain A, )
4: VAR_040070 (R561R, chain A, )
5: VAR_040071 (R653R, chain A, )
6: VAR_055360 (L686M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040067
T
13
K
TGM3_HUMAN
Polymorphism
214803
A
T
12
K
2
UniProt
VAR_040068
I
163
L
TGM3_HUMAN
Polymorphism
6048066
A
I
162
L
3
UniProt
VAR_040069
S
249
N
TGM3_HUMAN
Polymorphism
214814
A
S
248
N
4
UniProt
VAR_040070
K
562
R
TGM3_HUMAN
Polymorphism
1042617
A
R
561
R
5
UniProt
VAR_040071
G
654
R
TGM3_HUMAN
Polymorphism
214830
A
R
653
R
6
UniProt
VAR_055360
L
687
M
TGM3_HUMAN
Polymorphism
45581032
A
L
686
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TRANSGLUTAMINASES (A:270-287)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSGLUTAMINASES
PS00547
Transglutaminases active site.
TGM3_HUMAN
271-288
1
A:270-287
[
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]
Exons
(13, 13)
Info
All Exons
Exon 1.1b (A:1-2)
Exon 1.2 (A:2-60)
Exon 1.3 (A:60-140)
Exon 1.4b (A:140-179)
Exon 1.5a (A:180-222)
Exon 1.6a (A:223-282)
Exon 1.7 (A:282-327)
Exon 1.8a (A:327-362)
Exon 1.9 (A:362-444)
Exon 1.10b (A:444-547 (gaps))
Exon 1.12 (A:547-599)
Exon 1.13 (A:600-644)
Exon 1.14a (A:644-692)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4b
05: Boundary 1.4b/1.5a
06: Boundary 1.5a/1.6a
07: Boundary 1.6a/1.7
08: Boundary 1.7/1.8a
09: Boundary 1.8a/1.9
10: Boundary 1.9/1.10b
11: Boundary 1.10b/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14a
14: Boundary 1.14a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000381458
1b
ENSE00001884839
chr20:
2276647-2276716
70
TGM3_HUMAN
1-3
3
1
A:1-2
2
1.2
ENST00000381458
2
ENSE00000858628
chr20:
2290303-2290476
174
TGM3_HUMAN
3-61
59
1
A:2-60
59
1.3
ENST00000381458
3
ENSE00000655744
chr20:
2290824-2291063
240
TGM3_HUMAN
61-141
81
1
A:60-140
81
1.4b
ENST00000381458
4b
ENSE00000655746
chr20:
2291657-2291775
119
TGM3_HUMAN
141-180
40
1
A:140-179
40
1.5a
ENST00000381458
5a
ENSE00000655748
chr20:
2293544-2293672
129
TGM3_HUMAN
181-223
43
1
A:180-222
43
1.6a
ENST00000381458
6a
ENSE00000655870
chr20:
2297714-2297891
178
TGM3_HUMAN
224-283
60
1
A:223-282
60
1.7
ENST00000381458
7
ENSE00001764210
chr20:
2297996-2298131
136
TGM3_HUMAN
283-328
46
1
A:282-327
46
1.8a
ENST00000381458
8a
ENSE00001696552
chr20:
2306495-2306598
104
TGM3_HUMAN
328-363
36
1
A:327-362
36
1.9
ENST00000381458
9
ENSE00001632148
chr20:
2308766-2309011
246
TGM3_HUMAN
363-445
83
1
A:362-444
83
1.10b
ENST00000381458
10b
ENSE00001671589
chr20:
2312648-2312956
309
TGM3_HUMAN
445-548
104
1
A:444-547 (gaps)
104
1.12
ENST00000381458
12
ENSE00001761978
chr20:
2315762-2315919
158
TGM3_HUMAN
548-600
53
1
A:547-599
53
1.13
ENST00000381458
13
ENSE00001622482
chr20:
2320500-2320633
134
TGM3_HUMAN
601-645
45
1
A:600-644
45
1.14a
ENST00000381458
14a
ENSE00001609199
chr20:
2321080-2321724
645
TGM3_HUMAN
645-693
49
1
A:644-692
49
[
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]
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d1nufa1 (A:1-140)
2a: SCOP_d1nufa2 (A:479-593)
2b: SCOP_d1nufa3 (A:594-692)
3a: SCOP_d1nufa4 (A:141-461)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Transglutaminase N-terminal domain
(17)
Protein domain
:
Transglutaminase N-terminal domain
(17)
Human (Homo sapiens), TGase E3 [TaxId: 9606]
(5)
1a
d1nufa1
A:1-140
Superfamily
:
Transglutaminase, two C-terminal domains
(18)
Family
:
Transglutaminase, two C-terminal domains
(17)
Protein domain
:
Transglutaminase, two C-terminal domains
(17)
Human (Homo sapiens), TGase E3 [TaxId: 9606]
(5)
2a
d1nufa2
A:479-593
2b
d1nufa3
A:594-692
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Transglutaminase core
(22)
Protein domain
:
Transglutaminase catalytic domain
(17)
Human (Homo sapiens), TGase E3 [TaxId: 9606]
(5)
3a
d1nufa4
A:141-461
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1nufA02 (A:143-479)
2a: CATH_1nufA04 (A:595-691)
2b: CATH_1nufA03 (A:480-594)
2c: CATH_1nufA01 (A:1-142)
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Coagulation Factor XIII; Chain A, domain 2
(19)
Homologous Superfamily
:
Coagulation Factor XIII, subunit A, domain 2
(19)
Human (Homo sapiens)
(18)
1a
1nufA02
A:143-479
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1nufA04
A:595-691
2b
1nufA03
A:480-594
2c
1nufA01
A:1-142
[
close CATH info
]
Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_Transglut_C_1nufA01 (A:594-692)
1b: PFAM_Transglut_C_1nufA02 (A:594-692)
2a: PFAM_Transglut_core_1nufA03 (A:239-354)
3a: PFAM_Transglut_N_1nufA04 (A:3-119)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Transglut_C
(8)
Homo sapiens (Human)
(8)
1a
Transglut_C-1nufA01
A:594-692
1b
Transglut_C-1nufA02
A:594-692
Clan
:
Peptidase_CA
(169)
Family
:
Transglut_core
(7)
Homo sapiens (Human)
(7)
2a
Transglut_core-1nufA03
A:239-354
Clan
:
no clan defined [family: Transglut_N]
(7)
Family
:
Transglut_N
(7)
Homo sapiens (Human)
(7)
3a
Transglut_N-1nufA04
A:3-119
[
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]
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Asymmetric Unit 1
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