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1NTE
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE SECOND PDZ DOMAIN OF SYNTENIN
Authors
:
B. S. Kang, D. R. Cooper, Y. Devedjiev, U. Derewenda, Z. S. Derewenda
Date
:
29 Jan 03 (Deposition) - 15 Jul 03 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.24
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Syntenin, Pdz Recognition, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Kang, D. R. Cooper, Y. Devedjiev, U. Derewenda, Z. S. Derewenda
Molecular Roots Of Degenerate Specificity In Syntenin'S Pdz Domain: Reassessment Of The Pdz Recognition Paradigm.
Structure V. 11 845 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: OXYGEN ATOM (Oa)
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Label:
No.
Name
Count
Type
Full Name
1
O
1
Ligand/Ion
OXYGEN ATOM
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:104 , HOH A:155 , CYS A:239 , ASN A:245
BINDING SITE FOR RESIDUE O A 178
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (-|A:198-273)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
SDCB1_HUMAN
114-193
198-273
1
-
A:198-273
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Exons
(3, 3)
Info
All Exons
Exon 1.6a (A:192-196 (gaps))
Exon 1.8a (A:197-250)
Exon 1.9 (A:251-273)
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All Exon Boundaries
1: Boundary 1.5c/1.6a
2: Boundary 1.6a/1.7c
3: Boundary 1.7c/1.8a
4: Boundary 1.8a/1.9
5: Boundary 1.9/1.10h
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000260130
1b
ENSE00001423873
chr8:
59465728-59465862
135
SDCB1_HUMAN
-
0
0
-
-
1.3c
ENST00000260130
3c
ENSE00002198946
chr8:
59477578-59477643
66
SDCB1_HUMAN
1-17
17
0
-
-
1.4b
ENST00000260130
4b
ENSE00000928399
chr8:
59483446-59483524
79
SDCB1_HUMAN
18-44
27
0
-
-
1.5c
ENST00000260130
5c
ENSE00000928400
chr8:
59484764-59484873
110
SDCB1_HUMAN
44-80
37
0
-
-
1.6a
ENST00000260130
6a
ENSE00000928401
chr8:
59488459-59488620
162
SDCB1_HUMAN
81-134
54
1
A:192-196 (gaps)
9
1.7c
ENST00000260130
7c
ENSE00000928402
chr8:
59490592-59490767
176
SDCB1_HUMAN
135-193
59
0
-
-
1.8a
ENST00000260130
8a
ENSE00000928403
chr8:
59492182-59492353
172
SDCB1_HUMAN
193-250
58
1
A:197-250
54
1.9
ENST00000260130
9
ENSE00000928404
chr8:
59493076-59493167
92
SDCB1_HUMAN
251-281
31
1
A:251-273
23
1.10h
ENST00000260130
10h
ENSE00002117339
chr8:
59494245-59495419
1175
SDCB1_HUMAN
281-298
18
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ntea_ (A:)
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(
)
Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
Syntenin 1
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d1ntea_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1nteA00 (A:192-273)
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Organisms
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
1nteA00
A:192-273
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PDZ_1nteA01 (A:198-270)
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Clans
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Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-1nteA01
A:198-270
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Asymmetric Unit 1
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