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Asym. Unit
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Asym.Unit (94 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CUB1-EGF-CUB2 REGION OF MASP2
Authors
:
H. Feinberg, J. C. M. Uitdehaag, J. M. Davies, R. Wallis, K. Drickamer, W
Date
:
28 Jan 03 (Deposition) - 20 May 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,G
Biol. Unit 1: A,G (1x)
Keywords
:
Mannose-Binding Protein, Masp, Cub Domain, Egf Like Domain. , Hydrolase, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
H. Feinberg, J. C. M. Uitdehaag, J. M. Davies, R. Wallis, K. Drickamer, W. I. Weis
Crystal Structure Of The Cub1-Egf-Cub2 Region Of Mannose-Binding Protein Associated Serine Protease-2
Embo J. V. 22 2348 2003
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: BETA-HYDROXYASPARAGINE (AHBa)
1b: BETA-HYDROXYASPARAGINE (AHBb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AHB
2
Mod. Amino Acid
BETA-HYDROXYASPARAGINE
2
CA
2
Ligand/Ion
CALCIUM ION
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:83 , ASN A:84
BINDING SITE FOR RESIDUE NAG A 1001
2
AC2
SOFTWARE
GLY G:83 , ASN G:84
BINDING SITE FOR RESIDUE NAG G 2001
3
AC3
SOFTWARE
ASP A:119 , VAL A:120 , AHB A:139 , TYR A:140 , GLY A:143 , HOH A:8033
BINDING SITE FOR RESIDUE CA A 3001
4
AC4
SOFTWARE
ASP G:119 , VAL G:120 , AHB G:139 , TYR G:140 , GLY G:143 , HOH G:9033
BINDING SITE FOR RESIDUE CA G 4001
5
AC5
SOFTWARE
VAL A:12 , SER A:13 , GLY A:15 , ARG A:26
BINDING SITE FOR RESIDUE EDO A 5001
6
AC6
SOFTWARE
VAL G:12 , SER G:13 , GLY G:15 , ARG G:26
BINDING SITE FOR RESIDUE EDO G 6001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: CUB (-|A:165-277,G:165-277)
2: EGF_CA (A:119-146,G:119-146)
3: ASX_HYDROXYL (A:137-148,G:137-148)
4: EGF_2 (A:146-161,G:146-161)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CUB
PS01180
CUB domain profile.
MASP2_RAT
18-137
184-296
2
-
A:165-277
G:165-277
2
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
MASP2_RAT
138-165
2
A:119-146
G:119-146
3
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
MASP2_RAT
156-167
2
A:137-148
G:137-148
4
EGF_2
PS01186
EGF-like domain signature 2.
MASP2_RAT
165-180
2
A:146-161
G:146-161
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1nt0a1 (A:5-119)
1b: SCOP_d1nt0a2 (A:165-278)
1c: SCOP_d1nt0g1 (G:5-119)
1d: SCOP_d1nt0g2 (G:165-278)
2a: SCOP_d1nt0a3 (A:120-164)
2b: SCOP_d1nt0g3 (G:120-164)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
CUB-like
(21)
Superfamily
:
Spermadhesin, CUB domain
(10)
Family
:
Spermadhesin, CUB domain
(9)
Protein domain
:
Mannose-binding protein associated serine protease 2, MASP2
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1nt0a1
A:5-119
1b
d1nt0a2
A:165-278
1c
d1nt0g1
G:5-119
1d
d1nt0g2
G:165-278
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Mannose-binding protein associated serine protease 2, MASP2
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
2a
d1nt0a3
A:120-164
2b
d1nt0g3
G:120-164
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1nt0A02 (A:120-163)
1b: CATH_1nt0G02 (G:120-163)
2a: CATH_1nt0A01 (A:5-119)
2b: CATH_1nt0G01 (G:5-119)
2c: CATH_1nt0A03 (A:164-278)
2d: CATH_1nt0G03 (G:164-278)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Norway rat (Rattus norvegicus)
(1)
1a
1nt0A02
A:120-163
1b
1nt0G02
G:120-163
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.290, no name defined]
(10)
Norway rat (Rattus norvegicus)
(1)
2a
1nt0A01
A:5-119
2b
1nt0G01
G:5-119
2c
1nt0A03
A:164-278
2d
1nt0G03
G:164-278
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_CUB_1nt0G01 (G:165-274)
1b: PFAM_CUB_1nt0G02 (G:165-274)
1c: PFAM_CUB_1nt0G03 (G:165-274)
1d: PFAM_CUB_1nt0G04 (G:165-274)
2a: PFAM_EGF_CA_1nt0G05 (G:119-161)
2b: PFAM_EGF_CA_1nt0G06 (G:119-161)
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)
Clan
:
CUB
(11)
Family
:
CUB
(11)
Rattus norvegicus (Rat)
(1)
1a
CUB-1nt0G01
G:165-274
1b
CUB-1nt0G02
G:165-274
1c
CUB-1nt0G03
G:165-274
1d
CUB-1nt0G04
G:165-274
Clan
:
EGF
(60)
Family
:
EGF_CA
(18)
Rattus norvegicus (Rat)
(1)
2a
EGF_CA-1nt0G05
G:119-161
2b
EGF_CA-1nt0G06
G:119-161
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Asymmetric Unit 1
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