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1NST
Asym. Unit
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Asym.Unit (53 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
THE SULFOTRANSFERASE DOMAIN OF HUMAN HAPARIN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE
Authors
:
Y. Kakuta, L. C. Pedersen, M. Negishi
Date
:
07 Sep 98 (Deposition) - 16 Sep 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Sulfotransferase, Pap, Haparin Sulfate, Haparin Sulfate Biosynthesis, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kakuta, T. Sueyoshi, M. Negishi, L. C. Pedersen
Crystal Structure Of The Sulfotransferase Domain Of Human Heparan Sulfate N-Deacetylase/ N-Sulfotransferase 1.
J. Biol. Chem. V. 274 10673 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3P
1
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:7 , HOH A:10 , HOH A:28 , HOH A:29 , HOH A:38 , HOH A:41 , LYS A:614 , THR A:615 , GLY A:616 , THR A:617 , THR A:618 , SER A:712 , PHE A:816 , TRP A:817 , LEU A:829 , LYS A:833 , GLY A:834 , ARG A:835 , TYR A:837
BINDING SITE FOR RESIDUE A3P A 301
[
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_072646 (G611S, chain A, )
2: VAR_072647 (F640L, chain A, )
3: VAR_072648 (E642D, chain A, )
4: VAR_072649 (R709Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_072646
G
611
S
NDST1_HUMAN
Disease (MRT46)
---
A
G
611
S
2
UniProt
VAR_072647
F
640
L
NDST1_HUMAN
Disease (MRT46)
---
A
F
640
L
3
UniProt
VAR_072648
E
642
D
NDST1_HUMAN
Disease (MRT46)
---
A
E
642
D
4
UniProt
VAR_072649
R
709
Q
NDST1_HUMAN
Disease (MRT46)
---
A
R
709
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(8, 8)
Info
All Exons
Exon 1.13 (A:579-583)
Exon 1.14 (A:584-616 (gaps))
Exon 1.15 (A:616-657)
Exon 1.16 (A:657-715 (gaps))
Exon 1.17 (A:716-772)
Exon 1.18 (A:773-809)
Exon 1.20 (A:809-843)
Exon 1.22c (A:844-879)
View:
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All Exon Boundaries
1: Boundary 1.12a/1.13
2: Boundary 1.13/1.14
3: Boundary 1.14/1.15
4: Boundary 1.15/1.16
5: Boundary 1.16/1.17
6: Boundary 1.17/1.18
7: Boundary 1.18/1.20
8: Boundary 1.20/1.22c
9: Boundary 1.22c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000261797
5a
ENSE00001607679
chr5:
149887674-149887788
115
NDST1_HUMAN
-
0
0
-
-
1.7e
ENST00000261797
7e
ENSE00001171009
chr5:
149900430-149901329
900
NDST1_HUMAN
1-171
171
0
-
-
1.8
ENST00000261797
8
ENSE00000972942
chr5:
149907366-149907860
495
NDST1_HUMAN
172-336
165
0
-
-
1.9
ENST00000261797
9
ENSE00000841211
chr5:
149912507-149912594
88
NDST1_HUMAN
337-366
30
0
-
-
1.10
ENST00000261797
10
ENSE00000439232
chr5:
149914429-149914583
155
NDST1_HUMAN
366-417
52
0
-
-
1.11
ENST00000261797
11
ENSE00000841214
chr5:
149915262-149915447
186
NDST1_HUMAN
418-479
62
0
-
-
1.12a
ENST00000261797
12a
ENSE00001198482
chr5:
149918790-149918918
129
NDST1_HUMAN
480-522
43
0
-
-
1.13
ENST00000261797
13
ENSE00001475127
chr5:
149919644-149919826
183
NDST1_HUMAN
523-583
61
1
A:579-583
5
1.14
ENST00000261797
14
ENSE00001507093
chr5:
149921132-149921228
97
NDST1_HUMAN
584-616
33
1
A:584-616 (gaps)
33
1.15
ENST00000261797
15
ENSE00001475124
chr5:
149922410-149922533
124
NDST1_HUMAN
616-657
42
1
A:616-657
42
1.16
ENST00000261797
16
ENSE00001475122
chr5:
149924874-149925048
175
NDST1_HUMAN
657-715
59
1
A:657-715 (gaps)
59
1.17
ENST00000261797
17
ENSE00001475121
chr5:
149927780-149927950
171
NDST1_HUMAN
716-772
57
1
A:716-772
57
1.18
ENST00000261797
18
ENSE00001475119
chr5:
149929240-149929349
110
NDST1_HUMAN
773-809
37
1
A:773-809
37
1.20
ENST00000261797
20
ENSE00001475118
chr5:
149931315-149931417
103
NDST1_HUMAN
809-843
35
1
A:809-843
35
1.22c
ENST00000261797
22c
ENSE00001475116
chr5:
149932775-149937773
4999
NDST1_HUMAN
844-882
39
1
A:844-879
36
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1nsta_ (A:)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
PAPS sulfotransferase
(54)
Protein domain
:
Heparan sulfate N-deacetylase/N-sulfotransferase domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1nsta_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1nstA00 (A:579-879)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1nstA00
A:579-879
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Sulfotransfer_1_1nstA01 (A:604-869)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Sulfotransfer_1
(24)
Homo sapiens (Human)
(16)
1a
Sulfotransfer_1-1nstA01
A:604-869
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Chain A
Asymmetric Unit 1
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