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1NR7
Biol. Unit 3
Info
Asym.Unit (954 KB)
Biol.Unit 1 (477 KB)
Biol.Unit 2 (476 KB)
Biol.Unit 3 (942 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO BOVINE GLUTAMATE DEHYDROGENASE
Authors
:
S. Banerjee, T. Schmidt, J. Fang, C. A. Stanley, T. J. Smith
Date
:
23 Jan 03 (Deposition) - 06 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Apo Bovine Glutamate Dehydrogenase Regulation Allostery, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Banerjee, T. Schmidt, J. Fang, C. A. Stanley, T. J. Smith
Structural Studies On Adp Activation Of Mammalian Glutamate Dehydrogenase And The Evolution Of Regulation
Biochemistry V. 42 3446 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: GLFV_DEHYDROGENASE (A:120-133,B:120-133,C:120-133,D:12...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLFV_DEHYDROGENASE
PS00074
Glu / Leu / Phe / Val dehydrogenases active site.
DHE3_BOVIN
177-190
12
A:120-133
B:120-133
C:120-133
D:120-133
E:120-133
F:120-133
G:120-133
H:120-133
I:120-133
J:120-133
K:120-133
L:120-133
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d1nr7a2 (A:6-208)
1b: SCOP_d1nr7b2 (B:6-208)
1c: SCOP_d1nr7c2 (C:6-208)
1d: SCOP_d1nr7d2 (D:6-208)
1e: SCOP_d1nr7e2 (E:6-208)
1f: SCOP_d1nr7f2 (F:6-208)
1g: SCOP_d1nr7g2 (G:6-208)
1h: SCOP_d1nr7h2 (H:6-208)
1i: SCOP_d1nr7i2 (I:6-208)
1j: SCOP_d1nr7j2 (J:6-208)
1k: SCOP_d1nr7k2 (K:6-208)
1l: SCOP_d1nr7l2 (L:6-208)
2a: SCOP_d1nr7a1 (A:209-501)
2b: SCOP_d1nr7b1 (B:209-501)
2c: SCOP_d1nr7c1 (C:209-501)
2d: SCOP_d1nr7d1 (D:209-501)
2e: SCOP_d1nr7e1 (E:209-501)
2f: SCOP_d1nr7f1 (F:209-501)
2g: SCOP_d1nr7g1 (G:209-501)
2h: SCOP_d1nr7h1 (H:209-501)
2i: SCOP_d1nr7i1 (I:209-501)
2j: SCOP_d1nr7j1 (J:209-501)
2k: SCOP_d1nr7k1 (K:209-501)
2l: SCOP_d1nr7l1 (L:209-501)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Aminoacid dehydrogenases
(28)
Protein domain
:
Glutamate dehydrogenase
(19)
Cow (Bos taurus) [TaxId: 9913]
(6)
1a
d1nr7a2
A:6-208
1b
d1nr7b2
B:6-208
1c
d1nr7c2
C:6-208
1d
d1nr7d2
D:6-208
1e
d1nr7e2
E:6-208
1f
d1nr7f2
F:6-208
1g
d1nr7g2
G:6-208
1h
d1nr7h2
H:6-208
1i
d1nr7i2
I:6-208
1j
d1nr7j2
J:6-208
1k
d1nr7k2
K:6-208
1l
d1nr7l2
L:6-208
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Glutamate dehydrogenase
(19)
Cow (Bos taurus) [TaxId: 9913]
(6)
2a
d1nr7a1
A:209-501
2b
d1nr7b1
B:209-501
2c
d1nr7c1
C:209-501
2d
d1nr7d1
D:209-501
2e
d1nr7e1
E:209-501
2f
d1nr7f1
F:209-501
2g
d1nr7g1
G:209-501
2h
d1nr7h1
H:209-501
2i
d1nr7i1
I:209-501
2j
d1nr7j1
J:209-501
2k
d1nr7k1
K:209-501
2l
d1nr7l1
L:209-501
[
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]
CATH Domains
(3, 36)
Info
all CATH domains
1a: CATH_1nr7A01 (A:57-205)
1b: CATH_1nr7B01 (B:57-205)
1c: CATH_1nr7C01 (C:57-205)
1d: CATH_1nr7D01 (D:57-205)
1e: CATH_1nr7E01 (E:57-205)
1f: CATH_1nr7F01 (F:57-205)
1g: CATH_1nr7G01 (G:57-205)
1h: CATH_1nr7H01 (H:57-205)
1i: CATH_1nr7I01 (I:57-205)
1j: CATH_1nr7J01 (J:57-205)
1k: CATH_1nr7K01 (K:57-205)
1l: CATH_1nr7L01 (L:57-205)
2a: CATH_1nr7A02 (A:206-500)
2b: CATH_1nr7J02 (J:206-500)
2c: CATH_1nr7K02 (K:206-500)
2d: CATH_1nr7L02 (L:206-500)
2e: CATH_1nr7B02 (B:206-500)
2f: CATH_1nr7C02 (C:206-500)
2g: CATH_1nr7D02 (D:206-500)
2h: CATH_1nr7E02 (E:206-500)
2i: CATH_1nr7F02 (F:206-500)
2j: CATH_1nr7G02 (G:206-500)
2k: CATH_1nr7H02 (H:206-500)
2l: CATH_1nr7I02 (I:206-500)
3a: CATH_1nr7A03 (A:6-56)
3b: CATH_1nr7B03 (B:6-56)
3c: CATH_1nr7K03 (K:6-56)
3d: CATH_1nr7L03 (L:6-56)
3e: CATH_1nr7C03 (C:6-56)
3f: CATH_1nr7D03 (D:6-56)
3g: CATH_1nr7E03 (E:6-56)
3h: CATH_1nr7F03 (F:6-56)
3i: CATH_1nr7G03 (G:6-56)
3j: CATH_1nr7H03 (H:6-56)
3k: CATH_1nr7I03 (I:6-56)
3l: CATH_1nr7J03 (J:6-56)
View:
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)
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)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Leucine Dehydrogenase; Chain A, domain 1
(52)
Homologous Superfamily
:
Leucine Dehydrogenase, chain A, domain 1
(52)
Cattle (Bos taurus)
(5)
1a
1nr7A01
A:57-205
1b
1nr7B01
B:57-205
1c
1nr7C01
C:57-205
1d
1nr7D01
D:57-205
1e
1nr7E01
E:57-205
1f
1nr7F01
F:57-205
1g
1nr7G01
G:57-205
1h
1nr7H01
H:57-205
1i
1nr7I01
I:57-205
1j
1nr7J01
J:57-205
1k
1nr7K01
K:57-205
1l
1nr7L01
L:57-205
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Cattle (Bos taurus)
(6)
2a
1nr7A02
A:206-500
2b
1nr7J02
J:206-500
2c
1nr7K02
K:206-500
2d
1nr7L02
L:206-500
2e
1nr7B02
B:206-500
2f
1nr7C02
C:206-500
2g
1nr7D02
D:206-500
2h
1nr7E02
E:206-500
2i
1nr7F02
F:206-500
2j
1nr7G02
G:206-500
2k
1nr7H02
H:206-500
2l
1nr7I02
I:206-500
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.140, no name defined]
(11)
Cattle (Bos taurus)
(5)
3a
1nr7A03
A:6-56
3b
1nr7B03
B:6-56
3c
1nr7K03
K:6-56
3d
1nr7L03
L:6-56
3e
1nr7C03
C:6-56
3f
1nr7D03
D:6-56
3g
1nr7E03
E:6-56
3h
1nr7F03
F:6-56
3i
1nr7G03
G:6-56
3j
1nr7H03
H:6-56
3k
1nr7I03
I:6-56
3l
1nr7J03
J:6-56
[
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]
Pfam Domains
(2, 24)
Info
all PFAM domains
1a: PFAM_ELFV_dehydrog_1nr7L01 (L:206-420)
1b: PFAM_ELFV_dehydrog_1nr7L02 (L:206-420)
1c: PFAM_ELFV_dehydrog_1nr7L03 (L:206-420)
1d: PFAM_ELFV_dehydrog_1nr7L04 (L:206-420)
1e: PFAM_ELFV_dehydrog_1nr7L05 (L:206-420)
1f: PFAM_ELFV_dehydrog_1nr7L06 (L:206-420)
1g: PFAM_ELFV_dehydrog_1nr7L07 (L:206-420)
1h: PFAM_ELFV_dehydrog_1nr7L08 (L:206-420)
1i: PFAM_ELFV_dehydrog_1nr7L09 (L:206-420)
1j: PFAM_ELFV_dehydrog_1nr7L10 (L:206-420)
1k: PFAM_ELFV_dehydrog_1nr7L11 (L:206-420)
1l: PFAM_ELFV_dehydrog_1nr7L12 (L:206-420)
2a: PFAM_ELFV_dehydrog_N_1nr7L13 (L:55-187)
2b: PFAM_ELFV_dehydrog_N_1nr7L14 (L:55-187)
2c: PFAM_ELFV_dehydrog_N_1nr7L15 (L:55-187)
2d: PFAM_ELFV_dehydrog_N_1nr7L16 (L:55-187)
2e: PFAM_ELFV_dehydrog_N_1nr7L17 (L:55-187)
2f: PFAM_ELFV_dehydrog_N_1nr7L18 (L:55-187)
2g: PFAM_ELFV_dehydrog_N_1nr7L19 (L:55-187)
2h: PFAM_ELFV_dehydrog_N_1nr7L20 (L:55-187)
2i: PFAM_ELFV_dehydrog_N_1nr7L21 (L:55-187)
2j: PFAM_ELFV_dehydrog_N_1nr7L22 (L:55-187)
2k: PFAM_ELFV_dehydrog_N_1nr7L23 (L:55-187)
2l: PFAM_ELFV_dehydrog_N_1nr7L24 (L:55-187)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
ELFV_dehydrog
(13)
Bos taurus (Bovine)
(5)
1a
ELFV_dehydrog-1nr7L01
L:206-420
1b
ELFV_dehydrog-1nr7L02
L:206-420
1c
ELFV_dehydrog-1nr7L03
L:206-420
1d
ELFV_dehydrog-1nr7L04
L:206-420
1e
ELFV_dehydrog-1nr7L05
L:206-420
1f
ELFV_dehydrog-1nr7L06
L:206-420
1g
ELFV_dehydrog-1nr7L07
L:206-420
1h
ELFV_dehydrog-1nr7L08
L:206-420
1i
ELFV_dehydrog-1nr7L09
L:206-420
1j
ELFV_dehydrog-1nr7L10
L:206-420
1k
ELFV_dehydrog-1nr7L11
L:206-420
1l
ELFV_dehydrog-1nr7L12
L:206-420
Clan
:
no clan defined [family: ELFV_dehydrog_N]
(13)
Family
:
ELFV_dehydrog_N
(13)
Bos taurus (Bovine)
(5)
2a
ELFV_dehydrog_N-1nr7L13
L:55-187
2b
ELFV_dehydrog_N-1nr7L14
L:55-187
2c
ELFV_dehydrog_N-1nr7L15
L:55-187
2d
ELFV_dehydrog_N-1nr7L16
L:55-187
2e
ELFV_dehydrog_N-1nr7L17
L:55-187
2f
ELFV_dehydrog_N-1nr7L18
L:55-187
2g
ELFV_dehydrog_N-1nr7L19
L:55-187
2h
ELFV_dehydrog_N-1nr7L20
L:55-187
2i
ELFV_dehydrog_N-1nr7L21
L:55-187
2j
ELFV_dehydrog_N-1nr7L22
L:55-187
2k
ELFV_dehydrog_N-1nr7L23
L:55-187
2l
ELFV_dehydrog_N-1nr7L24
L:55-187
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Asym.Unit (954 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (476 KB)
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