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(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURES OF THYMUS AND ACTIVATION-REGULATED CHEMOKINE
Authors
:
O. A. Asojo, C. Boulegue, D. M. Hoover, W. Lu, J. Lubkowski
Date
:
23 Jan 03 (Deposition) - 05 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.18
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tarc, Chemokine, Cytokine, Cc-Chemokine, Chemotaxis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. A. Asojo, C. Boulegue, D. M. Hoover, W. Lu, J. Lubkowski
Structures Of Thymus And Activation-Regulated Chemokine (Tarc).
Acta Crystallogr. , Sect. D V. 59 1165 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
(1, 2)
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(mutated residues are not available)
All SNPs/Variants
1: VAR_048709 (V44M, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048709
V
67
M
CCL17_HUMAN
Polymorphism
34379253
A/B
V
44
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SMALL_CYTOKINES_CC (A:10-51,B:10-51)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMALL_CYTOKINES_CC
PS00472
Small cytokines (intercrine/chemokine) C-C subfamily signature.
CCL17_HUMAN
33-74
2
A:10-51
B:10-51
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Exons
(2, 4)
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All Exons
Exon 1.3 (A:8-40 | B:8-40)
Exon 1.4 (A:40-69 | B:40-69)
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1: Boundary 1.2b/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000219244
1
ENSE00001518386
chr16:
57438679-57438748
70
CCL17_HUMAN
-
0
0
-
-
1.2b
ENST00000219244
2b
ENSE00001298183
chr16:
57447786-57447914
129
CCL17_HUMAN
1-24
24
0
-
-
1.3
ENST00000219244
3
ENSE00000685201
chr16:
57448993-57449110
118
CCL17_HUMAN
24-63
40
2
A:8-40
B:8-40
33
33
1.4
ENST00000219244
4
ENSE00001290890
chr16:
57449677-57449974
298
CCL17_HUMAN
63-94
32
2
A:40-69
B:40-69
30
30
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SCOP Domains
(1, 2)
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1a: SCOP_d1nr2a_ (A:)
1b: SCOP_d1nr2b_ (B:)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IL8-like
(118)
Superfamily
:
Interleukin 8-like chemokines
(117)
Family
:
Interleukin 8-like chemokines
(113)
Protein domain
:
Thymus and activation-regulated chemokine, TRAC
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1nr2a_
A:
1b
d1nr2b_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1nr2A00 (A:8-69)
1b: CATH_1nr2B00 (B:8-69)
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)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
[unclassified]
(41)
1a
1nr2A00
A:8-69
1b
1nr2B00
B:8-69
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_IL8_1nr2B01 (B:8-65)
1b: PFAM_IL8_1nr2B02 (B:8-65)
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Clan
:
no clan defined [family: IL8]
(55)
Family
:
IL8
(55)
Homo sapiens (Human)
(49)
1a
IL8-1nr2B01
B:8-65
1b
IL8-1nr2B02
B:8-65
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Asym.Unit (30 KB)
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