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1NQ2
Biol. Unit 1
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
TWO RTH MUTANTS WITH IMPAIRED HORMONE BINDING
Authors
:
B. R. Huber, B. Sandler, B. L. West, S. T. Cunha-Lima, H. T. Nguyen, J. W. A J. D. Baxter, R. J. Fletterick
Date
:
21 Jan 03 (Deposition) - 15 Apr 03 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Alpha Helical, Ligand Binding Domain, Hormone-Growth Factor Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. R. Huber, B. Sandler, B. L. West, S. T. Cunha-Lima, H. T. Nguyen, J. W. Apriletti, J. D. Baxter, R. J. Fletterick
Two Resistance To Thyroid Hormone Mutants With Impaired Hormone Binding
Mol. Endocrinol. V. 17 643 2003
[
close entry info
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: [4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-... (4HYa)
2a: ARSENIC (ARSa)
2b: ARSENIC (ARSb)
2c: ARSENIC (ARSc)
2d: ARSENIC (ARSd)
2e: ARSENIC (ARSe)
3a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4HY
1
Ligand/Ion
[4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-DIIODO-PHENYL]-ACETICACID
2
ARS
5
Ligand/Ion
ARSENIC
3
NA
-1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:351 , HOH A:974 , HOH A:978
BINDING SITE FOR RESIDUE NA A 700
2
AC2
SOFTWARE
PHE A:272 , ALA A:279 , ARG A:282 , MET A:313 , THR A:317 , ASN A:331 , LEU A:346 , ILE A:353 , HIS A:435 , MET A:442 , PHE A:455
BINDING SITE FOR RESIDUE 4HY A 500
3
AC3
SOFTWARE
CYS A:298
BINDING SITE FOR RESIDUE ARS A 600
4
AC4
SOFTWARE
CYS A:294
BINDING SITE FOR RESIDUE ARS A 601
5
AC5
SOFTWARE
CYS A:388 , ARG A:391 , HOH A:952
BINDING SITE FOR RESIDUE ARS A 602
6
AC6
SOFTWARE
ASP A:427 , CYS A:434
BINDING SITE FOR RESIDUE ARS A 603
7
AC7
SOFTWARE
CYS A:434
BINDING SITE FOR RESIDUE ARS A 604
[
close Site info
]
SAPs(SNPs)/Variants
(35, 35)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_050577 (D216G, chain A, )
02: VAR_004632 (A234T, chain A, )
03: VAR_004633 (R243W, chain A, )
04: VAR_059041 (A268G, chain A, )
05: VAR_004634 (R316H, chain A, )
06: VAR_004635 (T317T, chain A, )
07: VAR_004636 (R320C, chain A, )
08: VAR_004637 (R320H, chain A, )
09: VAR_059042 (N331D, chain A, )
10: VAR_004638 (G332R, chain A, )
11: VAR_059043 (A335P, chain A, )
12: VAR_011784 (T337I, chain A, )
13: VAR_004640 (R338W, chain A, )
14: VAR_004641 (Q340H, chain A, )
15: VAR_059044 (L341P, chain A, )
16: VAR_004642 (K342I, chain A, )
17: VAR_004645 (G345R, chain A, )
18: VAR_004644 (G345S, chain A, )
19: VAR_004643 (G345V, chain A, )
20: VAR_059045 (L346F, chain A, )
21: VAR_004646 (G347E, chain A, )
22: VAR_004647 (V348E, chain A, )
23: VAR_004648 (T426I, chain A, )
24: VAR_058508 (R429Q, chain A, )
25: VAR_059046 (I431M, chain A, )
26: VAR_004649 (R438H, chain A, )
27: VAR_004650 (M442V, chain A, )
28: VAR_004651 (K443E, chain A, )
29: VAR_004652 (C446R, chain A, )
30: VAR_059047 (P447T, chain A, )
31: VAR_004653 (P453H, chain A, )
32: VAR_059048 (P453L, chain A, )
33: VAR_004654 (P453S, chain A, )
34: VAR_004655 (P453T, chain A, )
35: VAR_059049 (F459C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_050577
D
216
G
THB_HUMAN
Polymorphism
9865746
A
D
216
G
02
UniProt
VAR_004632
A
234
T
THB_HUMAN
Disease (GTHR)
---
A
A
234
T
03
UniProt
VAR_004633
R
243
W
THB_HUMAN
Disease (GTHR)
---
A
R
243
W
04
UniProt
VAR_059041
A
268
G
THB_HUMAN
Disease (GTHR)
---
A
A
268
G
05
UniProt
VAR_004634
R
316
H
THB_HUMAN
Disease (PRTH)
---
A
R
316
H
06
UniProt
VAR_004635
A
317
T
THB_HUMAN
Disease (GTHR)
---
A
T
317
T
07
UniProt
VAR_004636
R
320
C
THB_HUMAN
Disease (GTHR)
---
A
R
320
C
08
UniProt
VAR_004637
R
320
H
THB_HUMAN
Disease (GTHR)
---
A
R
320
H
09
UniProt
VAR_059042
N
331
D
THB_HUMAN
Disease (GTHR)
---
A
N
331
D
10
UniProt
VAR_004638
G
332
R
THB_HUMAN
Disease (GTHR)
28999969
A
G
332
R
11
UniProt
VAR_059043
A
335
P
THB_HUMAN
Disease (GTHR)
---
A
A
335
P
12
UniProt
VAR_011784
T
337
I
THB_HUMAN
Polymorphism
1054624
A
T
337
I
13
UniProt
VAR_004640
R
338
W
THB_HUMAN
Disease (GTHR)
---
A
R
338
W
14
UniProt
VAR_004641
Q
340
H
THB_HUMAN
Disease (GTHR)
---
A
Q
340
H
15
UniProt
VAR_059044
L
341
P
THB_HUMAN
Disease (GTHR)
---
A
L
341
P
16
UniProt
VAR_004642
K
342
I
THB_HUMAN
Disease (GTHR)
---
A
K
342
I
17
UniProt
VAR_004645
G
345
R
THB_HUMAN
Disease (GTHR)
---
A
G
345
R
18
UniProt
VAR_004644
G
345
S
THB_HUMAN
Disease (GTHR)
---
A
G
345
S
19
UniProt
VAR_004643
G
345
V
THB_HUMAN
Disease (GTHR)
28999970
A
G
345
V
20
UniProt
VAR_059045
L
346
F
THB_HUMAN
Disease (GTHR)
---
A
L
346
F
21
UniProt
VAR_004646
G
347
E
THB_HUMAN
Disease (GTHR)
28999971
A
G
347
E
22
UniProt
VAR_004647
V
348
E
THB_HUMAN
Disease (GTHR)
---
A
V
348
E
23
UniProt
VAR_004648
T
426
I
THB_HUMAN
Disease (GTHR)
---
A
T
426
I
24
UniProt
VAR_058508
R
429
Q
THB_HUMAN
Disease (PRTH)
---
A
R
429
Q
25
UniProt
VAR_059046
I
431
M
THB_HUMAN
Disease (GTHR)
---
A
I
431
M
26
UniProt
VAR_004649
R
438
H
THB_HUMAN
Disease (GTHR)
---
A
R
438
H
27
UniProt
VAR_004650
M
442
V
THB_HUMAN
Disease (GTHR)
---
A
M
442
V
28
UniProt
VAR_004651
K
443
E
THB_HUMAN
Disease (GTHR)
---
A
K
443
E
29
UniProt
VAR_004652
C
446
R
THB_HUMAN
Disease (GTHR)
---
A
C
446
R
30
UniProt
VAR_059047
P
447
T
THB_HUMAN
Disease (GTHR)
---
A
P
447
T
31
UniProt
VAR_004653
P
453
H
THB_HUMAN
Disease (GTHR)
---
A
P
453
H
32
UniProt
VAR_059048
P
453
L
THB_HUMAN
Disease (GTHR)
---
A
P
453
L
33
UniProt
VAR_004654
P
453
S
THB_HUMAN
Disease (GTHR)
---
A
P
453
S
34
UniProt
VAR_004655
P
453
T
THB_HUMAN
Disease (GTHR)
28933408
A
P
453
T
35
UniProt
VAR_059049
F
459
C
THB_HUMAN
Disease (GTHR)
---
A
F
459
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1nq2a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Thyroid hormone receptor beta (TR-beta)
(15)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d1nq2a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1nq2A00 (A:198-460)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1nq2A00
A:198-460
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (51 KB)
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