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Asym. Unit
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Asym.Unit (195 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (49 KB)
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(1)
Title
:
STRUCTURE OF SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN HI0607
Authors
:
S. Korolev, O. Koroleva, T. Zarembinski, F. Collart, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date
:
20 Jan 03 (Deposition) - 29 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Singh, S. Korolev, O. Koroleva, T. Zarembinski, F. Collart, A. Joachimiak, D. Christendat
Crystal Structure Of A Novel Shikimate Dehydrogenase From Haemophilus Influenzae.
J. Biol. Chem. V. 280 17101 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACE
3
Mod. Amino Acid
ACETYL GROUP
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:78 , SER B:80 , HOH B:2150 , HOH B:2192
BINDING SITE FOR RESIDUE ACE B 2001
2
AC2
SOFTWARE
SER D:11 , GLY D:20 , TYR D:37 , HOH D:2005 , HOH D:2099
BINDING SITE FOR RESIDUE ACE D 2002
3
AC3
SOFTWARE
ARG C:58 , VAL C:91 , ASP C:93 , HOH C:2005 , HOH C:2052
BINDING SITE FOR RESIDUE ACE C 2003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1npya2 (A:1-102)
1b: SCOP_d1npyb2 (B:1-102)
1c: SCOP_d1npyc2 (C:1-102)
1d: SCOP_d1npyd2 (D:1-102)
2a: SCOP_d1npya1 (A:103-269)
2b: SCOP_d1npyb1 (B:103-270)
2c: SCOP_d1npyc1 (C:103-270)
2d: SCOP_d1npyd1 (D:103-270)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Shikimate dehydrogenase-like
(14)
Protein domain
:
Shikimate 5-dehydrogenase-like protein HI0607
(1)
Haemophilus influenzae [TaxId: 727]
(1)
1a
d1npya2
A:1-102
1b
d1npyb2
B:1-102
1c
d1npyc2
C:1-102
1d
d1npyd2
D:1-102
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Shikimate 5-dehydrogenase-like protein HI0607
(1)
Haemophilus influenzae [TaxId: 727]
(1)
2a
d1npya1
A:103-269
2b
d1npyb1
B:103-270
2c
d1npyc1
C:103-270
2d
d1npyd1
D:103-270
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1npyA01 (A:1-100)
1b: CATH_1npyB01 (B:1-100)
1c: CATH_1npyC01 (C:1-100)
1d: CATH_1npyD01 (D:1-100)
2a: CATH_1npyA02 (A:101-269)
2b: CATH_1npyB02 (B:101-269)
2c: CATH_1npyC02 (C:101-269)
2d: CATH_1npyD02 (D:101-269)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Leucine Dehydrogenase; Chain A, domain 1
(52)
Homologous Superfamily
:
Leucine Dehydrogenase, chain A, domain 1
(52)
Haemophilus influenzae. Organism_taxid: 727.
(3)
1a
1npyA01
A:1-100
1b
1npyB01
B:1-100
1c
1npyC01
C:1-100
1d
1npyD01
D:1-100
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Haemophilus influenzae. Organism_taxid: 727.
(14)
2a
1npyA02
A:101-269
2b
1npyB02
B:101-269
2c
1npyC02
C:101-269
2d
1npyD02
D:101-269
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Shikimate_DH_1npyD01 (D:109-222)
1b: PFAM_Shikimate_DH_1npyD02 (D:109-222)
1c: PFAM_Shikimate_DH_1npyD03 (D:109-222)
1d: PFAM_Shikimate_DH_1npyD04 (D:109-222)
2a: PFAM_Shikimate_dh_N_1npyD05 (D:18-90)
2b: PFAM_Shikimate_dh_N_1npyD06 (D:18-90)
2c: PFAM_Shikimate_dh_N_1npyD07 (D:18-90)
2d: PFAM_Shikimate_dh_N_1npyD08 (D:18-90)
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Clan
:
NADP_Rossmann
(1239)
Family
:
Shikimate_DH
(16)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(3)
1a
Shikimate_DH-1npyD01
D:109-222
1b
Shikimate_DH-1npyD02
D:109-222
1c
Shikimate_DH-1npyD03
D:109-222
1d
Shikimate_DH-1npyD04
D:109-222
Clan
:
no clan defined [family: Shikimate_dh_N]
(15)
Family
:
Shikimate_dh_N
(15)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(3)
2a
Shikimate_dh_N-1npyD05
D:18-90
2b
Shikimate_dh_N-1npyD06
D:18-90
2c
Shikimate_dh_N-1npyD07
D:18-90
2d
Shikimate_dh_N-1npyD08
D:18-90
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Asym.Unit (195 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (51 KB)
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Biol.Unit 3 (51 KB)
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