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1NPP
Biol. Unit 1
Info
Asym.Unit (178 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (47 KB)
Biol.Unit 5 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS NUSG IN P2(1)
Authors
:
J. R. Knowlton, M. Bubunenko, M. Andrykovitch, W. Guo, K. M. Routzahn, D. S. Waugh, D. L. Court, X. Ji
Date
:
18 Jan 03 (Deposition) - 11 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Keywords
:
Rnap Transcription Factor, Nusg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Knowlton, M. Bubunenko, M. Andrykovitch, W. Guo, K. M. Routzahn, D. S. Waugh, D. L. Court, X. Ji
A Spring-Loaded State Of Nusg In Its Functional Cycle Is Suggested By X-Ray Crystallography And Supported By Site-Directed Mutants
Biochemistry V. 42 2275 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ISOPROPYL ALCOHOL (IPAa)
1b: ISOPROPYL ALCOHOL (IPAb)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: NUSG (A:231-240)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUSG
PS01014
Transcription termination factor nusG signature.
NUSG_AQUAE
231-240
1
A:231-240
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1nppa1 (A:51-131)
1b: SCOP_d1nppb1 (B:51-131)
1c: SCOP_d1nppc1 (C:51-131)
1d: SCOP_d1nppd1 (D:51-131)
2a: SCOP_d1nppa2 (A:191-248)
2b: SCOP_d1nppb2 (B:191-248)
2c: SCOP_d1nppc2 (C:191-247)
2d: SCOP_d1nppd2 (D:191-245)
3a: SCOP_d1nppa3 (A:5-50,A:132-190)
3b: SCOP_d1nppb3 (B:8-50,B:132-190)
3c: SCOP_d1nppc3 (C:10-50,C:132-190)
3d: SCOP_d1nppd3 (D:6-50,D:132-190)
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Protein Domains
(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
N-utilization substance G protein NusG, insert domain
(4)
Superfamily
:
N-utilization substance G protein NusG, insert domain
(4)
Family
:
N-utilization substance G protein NusG, insert domain
(4)
Protein domain
:
N-utilization substance G protein NusG, insert domain
(4)
Aquifex aeolicus [TaxId: 63363]
(4)
1a
d1nppa1
A:51-131
1b
d1nppb1
B:51-131
1c
d1nppc1
C:51-131
1d
d1nppd1
D:51-131
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Translation proteins SH3-like domain
(251)
Family
:
N-utilization substance G protein NusG, C-terminal domain
(6)
Protein domain
:
N-utilization substance G protein NusG, C-terminal domain
(5)
Aquifex aeolicus [TaxId: 63363]
(3)
2a
d1nppa2
A:191-248
2b
d1nppb2
B:191-248
2c
d1nppc2
C:191-247
2d
d1nppd2
D:191-245
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
N-utilization substance G protein NusG, N-terminal domain
(6)
Family
:
N-utilization substance G protein NusG, N-terminal domain
(6)
Protein domain
:
N-utilization substance G protein NusG, N-terminal domain
(6)
Aquifex aeolicus [TaxId: 63363]
(4)
3a
d1nppa3
A:5-50,A:132-190
3b
d1nppb3
B:8-50,B:132-190
3c
d1nppc3
C:10-50,C:132-190
3d
d1nppd3
D:6-50,D:132-190
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1nppA01 (A:9-49,A:132-185)
1b: CATH_1nppB01 (B:9-49,B:132-185)
1c: CATH_1nppD01 (D:9-49,D:132-185)
1d: CATH_1nppC01 (C:10-49,C:132-185)
2a: CATH_1nppB03 (B:186-248)
2b: CATH_1nppA03 (A:186-247)
2c: CATH_1nppC03 (C:186-246)
2d: CATH_1nppD03 (D:186-245)
3a: CATH_1nppA02 (A:50-131)
3b: CATH_1nppB02 (B:50-131)
3c: CATH_1nppC02 (C:50-131)
3d: CATH_1nppD02 (D:50-131)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.940, no name defined]
(5)
Aquifex aeolicus. Organism_taxid: 63363.
(2)
1a
1nppA01
A:9-49,A:132-185
1b
1nppB01
B:9-49,B:132-185
1c
1nppD01
D:9-49,D:132-185
1d
1nppC01
C:10-49,C:132-185
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.30, no name defined]
(111)
Aquifex aeolicus. Organism_taxid: 63363.
(2)
2a
1nppB03
B:186-248
2b
1nppA03
A:186-247
2c
1nppC03
C:186-246
2d
1nppD03
D:186-245
Architecture
:
Sandwich
(5577)
Topology
:
mini-chromosome maintenance (MCM) complex, domain 2
(4)
Homologous Superfamily
:
NusG, domain 2
(4)
Aquifex aeolicus. Organism_taxid: 63363.
(2)
3a
1nppA02
A:50-131
3b
1nppB02
B:50-131
3c
1nppC02
C:50-131
3d
1nppD02
D:50-131
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_KOW_1nppD01 (D:197-232)
1b: PFAM_KOW_1nppD02 (D:197-232)
1c: PFAM_KOW_1nppD03 (D:197-232)
1d: PFAM_KOW_1nppD04 (D:197-232)
2a: PFAM_NusG_1nppD05 (D:81-175)
2b: PFAM_NusG_1nppD06 (D:81-175)
2c: PFAM_NusG_1nppD07 (D:81-175)
2d: PFAM_NusG_1nppD08 (D:81-175)
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Clan
:
KOW
(56)
Family
:
KOW
(52)
Aquifex aeolicus
(2)
1a
KOW-1nppD01
D:197-232
1b
KOW-1nppD02
D:197-232
1c
KOW-1nppD03
D:197-232
1d
KOW-1nppD04
D:197-232
Clan
:
NusG-like
(8)
Family
:
NusG
(8)
Aquifex aeolicus
(3)
2a
NusG-1nppD05
D:81-175
2b
NusG-1nppD06
D:81-175
2c
NusG-1nppD07
D:81-175
2d
NusG-1nppD08
D:81-175
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Asym.Unit (178 KB)
Header - Asym.Unit
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