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1NPJ
Asym. Unit
Info
Asym.Unit (184 KB)
Biol.Unit 1 (179 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H145A MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES FAECALIS
Authors
:
H. J. Wijma, M. J. Boulanger, A. Molon, M. Fittipaldi, M. Huber, M. E. Murphy, M. P. Verbeet, G. W. Canters
Date
:
18 Jan 03 (Deposition) - 29 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Copper Nitrite Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Wijma, M. J. Boulanger, A. Molon, M. Fittipaldi, M. Huber, M. E. Murphy, M. P. Verbeet, G. W. Canters
Reconstitution Of The Type-1 Active Site Of The H145G/A Variants Of Nitrite Reductase By Ligand Insertion
Biochemistry V. 42 4075 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
View:
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No.
Name
Count
Type
Full Name
1
CU
6
Ligand/Ion
COPPER (II) ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:95 , CYS A:136 , MET A:150
BINDING SITE FOR RESIDUE CU A 501
2
AC2
SOFTWARE
ASP A:98 , HIS A:100 , HIS A:135 , HOH A:503 , HIS B:306
BINDING SITE FOR RESIDUE CU A 502
3
AC3
SOFTWARE
HIS B:95 , CYS B:136 , MET B:150
BINDING SITE FOR RESIDUE CU B 501
4
AC4
SOFTWARE
HIS B:100 , HIS B:135 , HOH B:504 , HIS C:306
BINDING SITE FOR RESIDUE CU B 502
5
AC5
SOFTWARE
HIS C:95 , CYS C:136 , MET C:150
BINDING SITE FOR RESIDUE CU C 501
6
AC6
SOFTWARE
HIS A:306 , HIS C:100 , HIS C:135 , HOH C:505
BINDING SITE FOR RESIDUE CU C 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1npja1 (A:4-166)
1b: SCOP_d1npja2 (A:167-339)
1c: SCOP_d1npjb1 (B:4-166)
1d: SCOP_d1npjb2 (B:167-339)
1e: SCOP_d1npjc1 (C:4-166)
1f: SCOP_d1npjc2 (C:167-339)
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Nitrite reductase, NIR
(79)
Alcaligenes faecalis, strain s-6 [TaxId: 511]
(31)
1a
d1npja1
A:4-166
1b
d1npja2
A:167-339
1c
d1npjb1
B:4-166
1d
d1npjb2
B:167-339
1e
d1npjc1
C:4-166
1f
d1npjc2
C:167-339
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1npjA01 (A:11-158)
1b: CATH_1npjB01 (B:11-158)
1c: CATH_1npjC01 (C:11-158)
1d: CATH_1npjA02 (A:159-325)
1e: CATH_1npjB02 (B:159-325)
1f: CATH_1npjC02 (C:159-325)
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Organisms
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)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Alcaligenes faecalis. Organism_taxid: 511.
(13)
1a
1npjA01
A:11-158
1b
1npjB01
B:11-158
1c
1npjC01
C:11-158
1d
1npjA02
A:159-325
1e
1npjB02
B:159-325
1f
1npjC02
C:159-325
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_1npjC01 (C:174-326)
1b: PFAM_Cu_oxidase_1npjC02 (C:174-326)
1c: PFAM_Cu_oxidase_1npjC03 (C:174-326)
2a: PFAM_Cu_oxidase_3_1npjC04 (C:44-161)
2b: PFAM_Cu_oxidase_3_1npjC05 (C:44-161)
2c: PFAM_Cu_oxidase_3_1npjC06 (C:44-161)
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Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Alcaligenes faecalis
(18)
1a
Cu-oxidase-1npjC01
C:174-326
1b
Cu-oxidase-1npjC02
C:174-326
1c
Cu-oxidase-1npjC03
C:174-326
Family
:
Cu-oxidase_3
(79)
Alcaligenes faecalis
(18)
2a
Cu-oxidase_3-1npjC04
C:44-161
2b
Cu-oxidase_3-1npjC05
C:44-161
2c
Cu-oxidase_3-1npjC06
C:44-161
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Asymmetric Unit 1
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Asym.Unit (184 KB)
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