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1NP8
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (55 KB)
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(1)
Title
:
18-K C-TERMINALLY TRUNUCATED SMALL SUBUNIT OF CALPAIN
Authors
:
E. K. Leinala, J. S. Arthur, P. Grochulski, P. L. Davies, J. S. Elce, Z. Jia
Date
:
17 Jan 03 (Deposition) - 18 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dimer In Solution, Oligomer In Crystal, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. K. Leinala, J. S. Arthur, P. Grochulski, P. L. Davies, J. S. Elce, Z. Jia
A Second Binding Site Revealed By C-Terminal Truncation Of Calpain Small Subunit, A Penta-Ef-Hand Protein
Proteins: V. 53 649 2003 Struct. , Funct. , Genet.
(for further references see the
PDB file header
)
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Hetero Components
(1, 13)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
13
Ligand/Ion
CADMIUM ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:68 , ASP A:70 , THR A:72 , LYS A:74 , GLU A:79 , HOH A:778
BINDING SITE FOR RESIDUE CD A 700
02
AC2
SOFTWARE
ASP A:100 , HOH A:769 , HOH A:771 , HOH A:774 , GLU B:615
BINDING SITE FOR RESIDUE CD A 701
03
AC3
SOFTWARE
ASP A:98 , ASP A:100 , SER A:102 , THR A:104 , GLU A:109 , HOH A:720
BINDING SITE FOR RESIDUE CD A 702
04
AC4
SOFTWARE
ALA A:25 , ASP A:28 , GLU A:30 , GLU A:35 , HOH A:726 , HOH A:772
BINDING SITE FOR RESIDUE CD A 703
05
AC5
SOFTWARE
ASP A:53 , ASP A:141 , ASP A:143 , ASN A:144 , HOH A:729 , HOH A:773
BINDING SITE FOR RESIDUE CD A 704
06
AC6
SOFTWARE
ASP A:27 , GLU A:115 , HOH A:768 , HOH A:776 , ASP B:600
BINDING SITE FOR RESIDUE CD A 705
07
AC7
SOFTWARE
HOH B:112 , ASP B:568 , ASP B:570 , THR B:572 , LYS B:574 , GLU B:579
BINDING SITE FOR RESIDUE CD B 707
08
AC8
SOFTWARE
HOH B:138 , ASP B:598 , ASP B:600 , SER B:602 , THR B:604 , GLU B:609
BINDING SITE FOR RESIDUE CD B 708
09
AC9
SOFTWARE
HOH B:142 , HOH B:186 , ALA B:525 , ASP B:528 , GLU B:530 , GLU B:535
BINDING SITE FOR RESIDUE CD B 709
10
BC1
SOFTWARE
HOH B:119 , ASP B:553 , ASP B:641 , ASP B:643 , ASN B:644
BINDING SITE FOR RESIDUE CD B 710
11
BC2
SOFTWARE
HIS A:47 , ASP A:49 , HOH A:777 , LYS B:519
BINDING SITE FOR RESIDUE CD A 711
12
BC3
SOFTWARE
HOH A:770 , HIS B:547 , ASP B:549 , LYS B:595
BINDING SITE FOR RESIDUE CD B 712
13
BC4
SOFTWARE
HOH B:148 , HOH B:198 , HIS B:624 , MET B:628
BINDING SITE FOR RESIDUE CD B 713
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_1 (A:68-80,B:568-580|A:98-110,B:598-6...)
2: EF_HAND_2 (A:85-120,B:585-620|A:55-83,B:555-5...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CPNS1_RAT
154-166
184-196
4
A:68-80
B:568-580
A:98-110
B:598-610
2
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CPNS1_RAT
171-206
141-169
236-270
6
A:85-120
B:585-620
A:55-83
B:555-583
A:150-159
B:650-659
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1np8a_ (A:)
1b: SCOP_d1np8b_ (B:)
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Classes
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)
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)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Penta-EF-hand proteins
(30)
Protein domain
:
Calpain small (regulatory) subunit (domain VI)
(16)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(8)
1a
d1np8a_
A:
1b
d1np8b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1np8A00 (A:11-159)
1b: CATH_1np8B00 (B:511-659)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
1a
1np8A00
A:11-159
1b
1np8B00
B:511-659
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_EF_hand_3_1np8B01 (B:656-659)
1b: PFAM_EF_hand_3_1np8B02 (B:656-659)
2a: PFAM_EF_hand_6_1np8B03 (B:527-586)
2b: PFAM_EF_hand_6_1np8B04 (B:527-586)
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Clans
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Families
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Organisms
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)
(
)
Clan
:
EF_hand
(270)
Family
:
EF_hand_3
(27)
Rattus norvegicus (Rat)
(3)
1a
EF_hand_3-1np8B01
B:656-659
1b
EF_hand_3-1np8B02
B:656-659
Family
:
EF_hand_6
(75)
Rattus norvegicus (Rat)
(9)
2a
EF_hand_6-1np8B03
B:527-586
2b
EF_hand_6-1np8B04
B:527-586
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (61 KB)
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