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1NNE
Asym. Unit
Info
Asym.Unit (274 KB)
Biol.Unit 1 (266 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MUTS-ADPBEF3-DNA COMPLEX
Authors
:
E. Alani, J. Y. Lee, M. J. Schofield, A. W. Kijas, P. Hsieh, W. Yang
Date
:
13 Jan 03 (Deposition) - 20 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.11
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dna, Dna Binding Protein/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Alani, J. Y. Lee, M. J. Schofield, A. W. Kijas, P. Hsieh, W. Yang
Crystal Structure And Biochemical Analysis Of The Muts-Adp-Beryllium Fluoride Complex Suggests A Conserved Mechanism For Atp Interactions In Mismatch Repair
J. Biol. Chem. V. 278 16088 2003
(for further references see the
PDB file header
)
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: BERYLLIUM TRIFLUORIDE ION (BEFa)
2b: BERYLLIUM TRIFLUORIDE ION (BEFb)
3a: 1,2-ETHANEDIOL (EDOa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BEF
2
Ligand/Ion
BERYLLIUM TRIFLUORIDE ION
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:583 , PRO A:584 , ASN A:585 , HIS A:696 , SER A:736 , TYR A:737 , GLY A:738 , THR B:1668
BINDING SITE FOR RESIDUE SO4 A 852
2
AC2
SOFTWARE
THR A:668 , GLY B:1583 , PRO B:1584 , ASN B:1585 , HIS B:1696 , SER B:1736 , TYR B:1737
BINDING SITE FOR RESIDUE SO4 B 1852
3
AC3
SOFTWARE
ASN A:585 , SER A:590 , ASP A:662 , GLU A:663 , ADP A:999
BINDING SITE FOR RESIDUE BEF A 998
4
AC4
SOFTWARE
GLU A:566 , PHE A:567 , VAL A:568 , ASN A:585 , MET A:586 , ALA A:587 , GLY A:588 , LYS A:589 , SER A:590 , THR A:591 , HIS A:726 , BEF A:998 , HOH A:1000
BINDING SITE FOR RESIDUE ADP A 999
5
AC5
SOFTWARE
ASN B:1585 , SER B:1590 , ASP B:1662 , GLU B:1663 , ADP B:1999
BINDING SITE FOR RESIDUE BEF B 1998
6
AC6
SOFTWARE
GLU B:1566 , PHE B:1567 , VAL B:1568 , ASN B:1585 , MET B:1586 , ALA B:1587 , GLY B:1588 , LYS B:1589 , SER B:1590 , THR B:1591 , HIS B:1726 , BEF B:1998
BINDING SITE FOR RESIDUE ADP B 1999
7
AC7
SOFTWARE
SER B:1637 , THR B:1638
BINDING SITE FOR RESIDUE EDO B 853
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DNA_MISMATCH_REPAIR_2 (A:657-673,B:1657-1673)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_MISMATCH_REPAIR_2
PS00486
DNA mismatch repair proteins mutS family signature.
MUTS_THEAQ
657-673
2
A:657-673
B:1657-1673
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1nnea1 (A:267-541)
1b: SCOP_d1nneb1 (B:1267-1541)
2a: SCOP_d1nnea4 (A:1-120)
2b: SCOP_d1nneb4 (B:1001-1120)
3a: SCOP_d1nnea2 (A:542-765)
3b: SCOP_d1nneb2 (B:1542-1765)
4a: SCOP_d1nnea3 (A:121-266)
4b: SCOP_d1nneb3 (B:1121-1266)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA repair protein MutS, domain III
(14)
Superfamily
:
DNA repair protein MutS, domain III
(14)
Family
:
DNA repair protein MutS, domain III
(12)
Protein domain
:
DNA repair protein MutS, domain III
(12)
Thermus aquaticus [TaxId: 271]
(4)
1a
d1nnea1
A:267-541
1b
d1nneb1
B:1267-1541
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MutS N-terminal domain-like
(18)
Superfamily
:
DNA repair protein MutS, domain I
(13)
Family
:
DNA repair protein MutS, domain I
(11)
Protein domain
:
DNA repair protein MutS, domain I
(11)
Thermus aquaticus [TaxId: 271]
(3)
2a
d1nnea4
A:1-120
2b
d1nneb4
B:1001-1120
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
DNA repair protein MutS, the C-terminal domain
(12)
Thermus aquaticus [TaxId: 271]
(4)
3a
d1nnea2
A:542-765
3b
d1nneb2
B:1542-1765
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
DNA repair protein MutS, domain II
(14)
Family
:
DNA repair protein MutS, domain II
(12)
Protein domain
:
DNA repair protein MutS, domain II
(12)
Thermus aquaticus [TaxId: 271]
(4)
4a
d1nnea3
A:121-266
4b
d1nneb3
B:1121-1266
[
close SCOP info
]
CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1nneA02 (A:131-248)
1b: CATH_1nneB02 (B:1131-1248)
2a: CATH_1nneB01 (B:1001-1126)
2b: CATH_1nneA01 (A:1-126)
3a: CATH_1nneA05 (A:542-765)
3b: CATH_1nneB05 (B:1542-1765)
4a: CATH_1nneA03 (A:249-368,A:513-541)
4b: CATH_1nneB03 (B:1249-1368,B:1513-1541)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.110, no name defined]
(14)
[unclassified]
(4)
1a
1nneA02
A:131-248
1b
1nneB02
B:1131-1248
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
MutS, DNA mismatch repair protein, domain I
(15)
Homologous Superfamily
:
[code=3.40.1170.10, no name defined]
(13)
[unclassified]
(4)
2a
1nneB01
B:1001-1126
2b
1nneA01
A:1-126
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
[unclassified]
(24)
3a
1nneA05
A:542-765
3b
1nneB05
B:1542-1765
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
MutS, DNA mismatch repair protein; Chain A, domain 3
(14)
Homologous Superfamily
:
[code=1.10.1420.10, no name defined]
(14)
[unclassified]
(4)
4a
1nneA03
A:249-368,A:513-541
4b
1nneB03
B:1249-1368,B:1513-1541
[
close CATH info
]
Pfam Domains
(5, 10)
Info
all PFAM domains
1a: PFAM_MutS_V_1nneB01 (B:1542-1765)
1b: PFAM_MutS_V_1nneB02 (B:1542-1765)
2a: PFAM_MutS_III_1nneB03 (B:1254-1535)
2b: PFAM_MutS_III_1nneB04 (B:1254-1535)
3a: PFAM_MutS_II_1nneB05 (B:1132-1240)
3b: PFAM_MutS_II_1nneB06 (B:1132-1240)
4a: PFAM_MutS_IV_1nneB07 (B:1403-1494)
4b: PFAM_MutS_IV_1nneB08 (B:1403-1494)
5a: PFAM_MutS_I_1nneB09 (B:1014-1125)
5b: PFAM_MutS_I_1nneB10 (B:1014-1125)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
MutS_V
(16)
Thermus aquaticus
(1)
1a
MutS_V-1nneB01
B:1542-1765
1b
MutS_V-1nneB02
B:1542-1765
Clan
:
no clan defined [family: MutS_III]
(16)
Family
:
MutS_III
(16)
Thermus aquaticus
(1)
2a
MutS_III-1nneB03
B:1254-1535
2b
MutS_III-1nneB04
B:1254-1535
Clan
:
no clan defined [family: MutS_II]
(16)
Family
:
MutS_II
(16)
Thermus aquaticus
(1)
3a
MutS_II-1nneB05
B:1132-1240
3b
MutS_II-1nneB06
B:1132-1240
Clan
:
no clan defined [family: MutS_IV]
(16)
Family
:
MutS_IV
(16)
Thermus aquaticus
(1)
4a
MutS_IV-1nneB07
B:1403-1494
4b
MutS_IV-1nneB08
B:1403-1494
Clan
:
no clan defined [family: MutS_I]
(16)
Family
:
MutS_I
(16)
Thermus aquaticus
(1)
5a
MutS_I-1nneB09
B:1014-1125
5b
MutS_I-1nneB10
B:1014-1125
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