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1NME
Biol. Unit 4
Info
Asym.Unit (52 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (183 KB)
Biol.Unit 3 (183 KB)
Biol.Unit 4 (93 KB)
Biol.Unit 5 (93 KB)
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(1)
Title
:
STRUCTURE OF CASP-3 WITH TETHERED SALICYLATE
Authors
:
D. A. Erlanson, J. Lam, C. Wiesmann, T. N. Luong, B. Simmons, W. Delano, I. C. Choong, M. Flanagan, D. Lee, T. O'Brian
Date
:
09 Jan 03 (Deposition) - 11 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (4x)
Biol. Unit 3: A,B (4x)
Biol. Unit 4: A,B (2x)
Biol. Unit 5: A,B (2x)
Keywords
:
Cysteine Proteinase; Sulfonamide Inhibition, Apoptosis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Erlanson, J. W. Lam, C. Wiesmann, T. N. Luong, R. L. Simmons, W. L. Delano, I. C. Choong, M. T. Burdett, W. M. Flanagan, D. Lee, E. M. Gordon, T. O'Brien
In Situ Assembly Of Enzyme Inhibitors Using Extended Tethering.
Nat. Biotechnol. V. 21 308 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 3-(2-MERCAPTO-ACETYLAMINO)-4-OXO-P... (158a)
2a: 2-HYDROXY-5-(2-MERCAPTO-ETHYLSULFA... (159a)
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Label:
No.
Name
Count
Type
Full Name
1
158
2
Ligand/Ion
3-(2-MERCAPTO-ACETYLAMINO)-4-OXO-PENTANOIC ACID
2
159
2
Ligand/Ion
2-HYDROXY-5-(2-MERCAPTO-ETHYLSULFAMOYL)-BENZOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:64 , SER A:120 , HIS A:121 , GLY A:122 , GLN A:161 , CYS A:163 , HOH A:9044 , HOH A:9054 , TYR B:204 , SER B:205 , ARG B:207 , 159 B:9002
BINDING SITE FOR RESIDUE 158 A 9001
2
AC2
SOFTWARE
158 A:9001 , HOH A:9184 , ARG B:207 , ASN B:208 , SER B:209 , TRP B:214 , SER B:249 , PHE B:250 , HOH B:9077
BINDING SITE FOR RESIDUE 159 B 9002
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_001401 (D190D, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001401
E
190
D
CASP3_HUMAN
Polymorphism
1049210
B
D
190
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:43-167)
2: CASPASE_HIS (A:108-122)
3: CASPASE_CYS (A:154-165)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP3_HUMAN
43-167
2
A:43-167
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP3_HUMAN
108-122
2
A:108-122
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP3_HUMAN
154-165
2
A:154-165
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1nme_1 (A:,B:)
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)
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Caspase-like
(92)
Superfamily
:
Caspase-like
(92)
Family
:
Caspase catalytic domain
(76)
Protein domain
:
Apopain (caspase-3, cpp32)
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d1nme.1
A:,B:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1nmeB00 (B:186-277)
2a: CATH_1nmeA00 (A:29-174)
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)
Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
Caspase-like
(31)
Human (Homo sapiens)
(31)
1a
1nmeB00
B:186-277
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
2a
1nmeA00
A:29-174
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C14_1nmeB01 (B:186-275)
1b: PFAM_Peptidase_C14_1nmeB02 (B:186-275)
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)
Clan
:
Peptidase_CD
(53)
Family
:
Peptidase_C14
(53)
Homo sapiens (Human)
(51)
1a
Peptidase_C14-1nmeB01
B:186-275
1b
Peptidase_C14-1nmeB02
B:186-275
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Asym.Unit (52 KB)
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Biol.Unit 3 (183 KB)
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