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1NLX
Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (227 KB)
Biol.Unit 10 (36 KB)
Biol.Unit 11 (37 KB)
Biol.Unit 12 (36 KB)
Biol.Unit 13 (37 KB)
Biol.Unit 14 (37 KB)
Biol.Unit 2 (37 KB)
Biol.Unit 3 (36 KB)
Biol.Unit 4 (37 KB)
Biol.Unit 5 (37 KB)
Biol.Unit 6 (36 KB)
Biol.Unit 7 (37 KB)
Biol.Unit 8 (37 KB)
Biol.Unit 9 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHL P 6, A MAJOR TIMOTHY GRASS POLLEN ALLERGEN CO-CRYSTALLIZED WITH ZINC
Authors
:
A. A. Fedorov, T. Ball, E. V. Fedorov, S. Vrtala, R. Valenta, S. C. Almo, S. K. Burley, New York Sgx Research Center For Structural Geno (Nysgxrc)
Date
:
07 Jan 03 (Deposition) - 21 Jan 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Biol. Unit 2: A,N (1x)
Biol. Unit 3: B,H (1x)
Biol. Unit 4: I,M (1x)
Biol. Unit 5: D,F (1x)
Biol. Unit 6: G,K (1x)
Biol. Unit 7: E,L (1x)
Biol. Unit 8: I,J (1x)
Biol. Unit 9: C,D (1x)
Biol. Unit 10: K,L (1x)
Biol. Unit 11: E,F (1x)
Biol. Unit 12: A,B (1x)
Biol. Unit 13: G,H (1x)
Biol. Unit 14: M,N (1x)
Keywords
:
Allergen Phl P 6, Four-Helix-Bundle, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Allergen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, T. Ball, E. V. Fedorov, S. Vrtala, R. Valenta, S. C. Almo
Crystal Structure Oh Phl P 6, A Major Timothy Grass Pollen Allergen Co-Crystallized With Zinc
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 35)
Info
All Hetero Components
1a: ARSENIC (ARSa)
1b: ARSENIC (ARSb)
1c: ARSENIC (ARSc)
1d: ARSENIC (ARSd)
1e: ARSENIC (ARSe)
1f: ARSENIC (ARSf)
1g: ARSENIC (ARSg)
2a: ZINC ION (ZNa)
2aa: ZINC ION (ZNaa)
2ab: ZINC ION (ZNab)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
2m: ZINC ION (ZNm)
2n: ZINC ION (ZNn)
2o: ZINC ION (ZNo)
2p: ZINC ION (ZNp)
2q: ZINC ION (ZNq)
2r: ZINC ION (ZNr)
2s: ZINC ION (ZNs)
2t: ZINC ION (ZNt)
2u: ZINC ION (ZNu)
2v: ZINC ION (ZNv)
2w: ZINC ION (ZNw)
2x: ZINC ION (ZNx)
2y: ZINC ION (ZNy)
2z: ZINC ION (ZNz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ARS
7
Ligand/Ion
ARSENIC
2
ZN
28
Ligand/Ion
ZINC ION
[
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Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:476 , ASN B:673 , ASP B:676 , HIS B:677 , GLU H:1903
BINDING SITE FOR RESIDUE ZN A 5001
02
AC2
SOFTWARE
ASN A:473 , ASP A:476 , HIS A:477 , ASP B:676 , GLU N:3103
BINDING SITE FOR RESIDUE ZN B 5002
03
AC3
SOFTWARE
ASP C:876 , ASN D:1073 , ASP D:1076 , HIS D:1077 , GLU F:1503
BINDING SITE FOR RESIDUE ZN C 5003
04
AC4
SOFTWARE
ASN C:873 , ASP C:876 , HIS C:877 , ASP D:1076 , GLU J:2303
BINDING SITE FOR RESIDUE ZN D 5004
05
AC5
SOFTWARE
GLU D:1103 , ASP E:1276 , ASN F:1473 , ASP F:1476 , HIS F:1477
BINDING SITE FOR RESIDUE ZN E 5005
06
AC6
SOFTWARE
ASN E:1273 , ASP E:1276 , HIS E:1277 , ASP F:1476 , GLU L:2703
BINDING SITE FOR RESIDUE ZN F 5006
07
AC7
SOFTWARE
GLU B:703 , ASP G:1676 , ASN H:1873 , ASP H:1876 , HIS H:1877
BINDING SITE FOR RESIDUE ZN G 5007
08
AC8
SOFTWARE
ASN G:1673 , ASP G:1676 , HIS G:1677 , ASP H:1876 , GLU K:2503
BINDING SITE FOR RESIDUE ZN H 5008
09
AC9
SOFTWARE
GLU C:903 , ASP I:2076 , ASN J:2273 , ASP J:2276 , HIS J:2277
BINDING SITE FOR RESIDUE ZN I 5009
10
BC1
SOFTWARE
ASN I:2073 , ASP I:2076 , HIS I:2077 , ASP J:2276 , GLU M:2903
BINDING SITE FOR RESIDUE ZN J 5010
11
BC2
SOFTWARE
GLU E:1303 , ASP K:2476 , ASN L:2673 , ASP L:2676 , HIS L:2677
BINDING SITE FOR RESIDUE ZN K 5011
12
BC3
SOFTWARE
GLU G:1703 , ASN K:2473 , ASP K:2476 , HIS K:2477 , ASP L:2676
BINDING SITE FOR RESIDUE ZN L 5012
13
BC4
SOFTWARE
GLU A:503 , ASP M:2876 , ASN N:3073 , ASP N:3076 , HIS N:3077
BINDING SITE FOR RESIDUE ZN M 5013
14
BC5
SOFTWARE
GLU I:2103 , ASN M:2873 , ASP M:2876 , HIS M:2877 , ASP N:3076
BINDING SITE FOR RESIDUE ZN N 5014
15
BC6
SOFTWARE
HIS A:490 , GLU N:3093 , HIS N:3105 , ARS N:7001
BINDING SITE FOR RESIDUE ZN A 6001
16
BC7
SOFTWARE
HIS B:690 , ARS B:7002 , GLU H:1893 , HIS H:1905
BINDING SITE FOR RESIDUE ZN B 6002
17
BC8
SOFTWARE
HIS C:890 , ARS C:7003 , GLU J:2293 , HIS J:2305
BINDING SITE FOR RESIDUE ZN C 6003
18
BC9
SOFTWARE
HIS D:1090 , ARS D:7004 , GLU F:1493 , HIS F:1505
BINDING SITE FOR RESIDUE ZN D 6004
19
CC1
SOFTWARE
HIS E:1290 , GLU L:2693 , HIS L:2705 , ARS L:7005
BINDING SITE FOR RESIDUE ZN E 6005
20
CC2
SOFTWARE
GLU D:1093 , HIS D:1105 , ARS D:7004 , HIS F:1490
BINDING SITE FOR RESIDUE ZN F 6006
21
CC3
SOFTWARE
HIS G:1690 , GLU K:2493 , HIS K:2505 , ARS K:7007
BINDING SITE FOR RESIDUE ZN G 6007
22
CC4
SOFTWARE
GLU B:693 , HIS B:705 , ARS B:7002 , HIS H:1890
BINDING SITE FOR RESIDUE ZN H 6008
23
CC5
SOFTWARE
HIS I:2090 , ARS I:7009 , GLU M:2893 , HIS M:2905
BINDING SITE FOR RESIDUE ZN I 6009
24
CC6
SOFTWARE
GLU C:893 , HIS C:905 , ARS C:7003 , HIS J:2290
BINDING SITE FOR RESIDUE ZN J 6010
25
CC7
SOFTWARE
GLU G:1693 , HIS G:1705 , HIS K:2490 , ARS K:7007
BINDING SITE FOR RESIDUE ZN K 6011
26
CC8
SOFTWARE
GLU E:1293 , HIS E:1305 , HIS L:2690 , ARS L:7005
BINDING SITE FOR RESIDUE ZN L 6012
27
CC9
SOFTWARE
GLU I:2093 , HIS I:2105 , ARS I:7009 , HIS M:2890
BINDING SITE FOR RESIDUE ZN M 6013
28
DC1
SOFTWARE
GLU A:493 , HIS A:505 , HIS N:3090 , ARS N:7001
BINDING SITE FOR RESIDUE ZN N 6014
29
DC2
SOFTWARE
ZN A:6001 , ZN N:6014
BINDING SITE FOR RESIDUE ARS N 7001
30
DC3
SOFTWARE
ZN B:6002 , ZN H:6008
BINDING SITE FOR RESIDUE ARS B 7002
31
DC4
SOFTWARE
ZN C:6003 , GLU J:2293 , ZN J:6010
BINDING SITE FOR RESIDUE ARS C 7003
32
DC5
SOFTWARE
ZN D:6004 , ZN F:6006
BINDING SITE FOR RESIDUE ARS D 7004
33
DC6
SOFTWARE
ZN E:6005 , GLU L:2693 , ZN L:6012
BINDING SITE FOR RESIDUE ARS L 7005
34
DC7
SOFTWARE
GLU G:1693 , ZN G:6007 , ZN K:6011
BINDING SITE FOR RESIDUE ARS K 7007
35
DC8
SOFTWARE
GLU I:2093 , ZN I:6009 , GLU M:2893 , ZN M:6013
BINDING SITE FOR RESIDUE ARS I 7009
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 14)
Info
All SCOP Domains
1a: SCOP_d1nlxa_ (A:)
1b: SCOP_d1nlxb_ (B:)
1c: SCOP_d1nlxk_ (K:)
1d: SCOP_d1nlxl_ (L:)
1e: SCOP_d1nlxm_ (M:)
1f: SCOP_d1nlxn_ (N:)
1g: SCOP_d1nlxc_ (C:)
1h: SCOP_d1nlxd_ (D:)
1i: SCOP_d1nlxe_ (E:)
1j: SCOP_d1nlxf_ (F:)
1k: SCOP_d1nlxg_ (G:)
1l: SCOP_d1nlxh_ (H:)
1m: SCOP_d1nlxi_ (I:)
1n: SCOP_d1nlxj_ (J:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Group V grass pollen allergen
(2)
Family
:
Group V grass pollen allergen
(2)
Protein domain
:
Pollen allergen Phl P 6
(1)
Timothy grass (Phleum pratense) [TaxId: 15957]
(1)
1a
d1nlxa_
A:
1b
d1nlxb_
B:
1c
d1nlxk_
K:
1d
d1nlxl_
L:
1e
d1nlxm_
M:
1f
d1nlxn_
N:
1g
d1nlxc_
C:
1h
d1nlxd_
D:
1i
d1nlxe_
E:
1j
d1nlxf_
F:
1k
d1nlxg_
G:
1l
d1nlxh_
H:
1m
d1nlxi_
I:
1n
d1nlxj_
J:
[
close SCOP info
]
CATH Domains
(1, 14)
Info
all CATH domains
1a: CATH_1nlxA00 (A:404-507)
1b: CATH_1nlxJ00 (J:2204-2307)
1c: CATH_1nlxK00 (K:2404-2507)
1d: CATH_1nlxL00 (L:2604-2707)
1e: CATH_1nlxM00 (M:2804-2907)
1f: CATH_1nlxN00 (N:3004-3107)
1g: CATH_1nlxB00 (B:604-707)
1h: CATH_1nlxC00 (C:804-907)
1i: CATH_1nlxD00 (D:1004-1107)
1j: CATH_1nlxE00 (E:1204-1307)
1k: CATH_1nlxF00 (F:1404-1507)
1l: CATH_1nlxG00 (G:1604-1707)
1m: CATH_1nlxH00 (H:1804-1907)
1n: CATH_1nlxI00 (I:2004-2107)
View:
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.320, no name defined]
(2)
Timothy grass (Phleum pratense)
(2)
1a
1nlxA00
A:404-507
1b
1nlxJ00
J:2204-2307
1c
1nlxK00
K:2404-2507
1d
1nlxL00
L:2604-2707
1e
1nlxM00
M:2804-2907
1f
1nlxN00
N:3004-3107
1g
1nlxB00
B:604-707
1h
1nlxC00
C:804-907
1i
1nlxD00
D:1004-1107
1j
1nlxE00
E:1204-1307
1k
1nlxF00
F:1404-1507
1l
1nlxG00
G:1604-1707
1m
1nlxH00
H:1804-1907
1n
1nlxI00
I:2004-2107
[
close CATH info
]
Pfam Domains
(1, 14)
Info
all PFAM domains
1a: PFAM_Pollen_allerg_2_1nlxN01 (N:3004-3107)
1b: PFAM_Pollen_allerg_2_1nlxN02 (N:3004-3107)
1c: PFAM_Pollen_allerg_2_1nlxN03 (N:3004-3107)
1d: PFAM_Pollen_allerg_2_1nlxN04 (N:3004-3107)
1e: PFAM_Pollen_allerg_2_1nlxN05 (N:3004-3107)
1f: PFAM_Pollen_allerg_2_1nlxN06 (N:3004-3107)
1g: PFAM_Pollen_allerg_2_1nlxN07 (N:3004-3107)
1h: PFAM_Pollen_allerg_2_1nlxN08 (N:3004-3107)
1i: PFAM_Pollen_allerg_2_1nlxN09 (N:3004-3107)
1j: PFAM_Pollen_allerg_2_1nlxN10 (N:3004-3107)
1k: PFAM_Pollen_allerg_2_1nlxN11 (N:3004-3107)
1l: PFAM_Pollen_allerg_2_1nlxN12 (N:3004-3107)
1m: PFAM_Pollen_allerg_2_1nlxN13 (N:3004-3107)
1n: PFAM_Pollen_allerg_2_1nlxN14 (N:3004-3107)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Pollen_allerg_2]
(2)
Family
:
Pollen_allerg_2
(2)
Phleum pratense (Common timothy)
(2)
1a
Pollen_allerg_2-1nlxN01
N:3004-3107
1b
Pollen_allerg_2-1nlxN02
N:3004-3107
1c
Pollen_allerg_2-1nlxN03
N:3004-3107
1d
Pollen_allerg_2-1nlxN04
N:3004-3107
1e
Pollen_allerg_2-1nlxN05
N:3004-3107
1f
Pollen_allerg_2-1nlxN06
N:3004-3107
1g
Pollen_allerg_2-1nlxN07
N:3004-3107
1h
Pollen_allerg_2-1nlxN08
N:3004-3107
1i
Pollen_allerg_2-1nlxN09
N:3004-3107
1j
Pollen_allerg_2-1nlxN10
N:3004-3107
1k
Pollen_allerg_2-1nlxN11
N:3004-3107
1l
Pollen_allerg_2-1nlxN12
N:3004-3107
1m
Pollen_allerg_2-1nlxN13
N:3004-3107
1n
Pollen_allerg_2-1nlxN14
N:3004-3107
[
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Asym.Unit (235 KB)
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