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1NJU
Biol. Unit 2
Info
Asym.Unit (157 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (150 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR
Authors
:
R. Khayat, R. Batra, C. Qian, T. Halmos, M. Bailey, L. Tong
Date
:
02 Jan 03 (Deposition) - 11 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Protease, Peptidomimetic Inhibitor, Induced-Fit, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Khayat, R. Batra, C. Qian, T. Halmos, M. Bailey, L. Tong
Structural And Biochemical Studies Of Inhibitor Binding To Human Cytomegalovirus Protease
Biochemistry V. 42 885 2003
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-(6-AMINOHEXANOYL)-3-METHYL-L-VAL... (0FPa)
1b: N-(6-AMINOHEXANOYL)-3-METHYL-L-VAL... (0FPb)
1c: N-(6-AMINOHEXANOYL)-3-METHYL-L-VAL... (0FPc)
1d: N-(6-AMINOHEXANOYL)-3-METHYL-L-VAL... (0FPd)
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No.
Name
Count
Type
Full Name
1
0FP
2
Ligand/Ion
N-(6-AMINOHEXANOYL)-3-METHYL-L-VALYL-3-METHYL-L-VALYL-N~1~-[(2S,3S)-3-HYDROXY-4-OXO-4-{[(1R)-1-PHENYLPROPYL]AMINO}BUTAN-2-YL]-N~4~,N~4~-DIMETHYL-L-ASPARTAMIDE
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLU C:1031 , ASN C:1062 , HIS C:1063 , SER C:1132 , LEU C:1133 , SER C:1134 , SER C:1135 , ARG C:1136 , ARG C:1137 , LYS C:1156 , CYS C:1161 , VAL C:1163 , GLY C:1164 , ARG C:1165 , ILE C:1231
BINDING SITE FOR RESIDUE 0FP C 1260
2
AC4
SOFTWARE
GLU D:1331 , HIS D:1363 , SER D:1432 , LEU D:1433 , SER D:1434 , SER D:1435 , ARG D:1436 , ARG D:1437 , ASP D:1439 , LYS D:1456 , CYS D:1461 , VAL D:1463 , GLY D:1464 , ARG D:1465 , ARG D:1466 , ILE D:1531
BINDING SITE FOR RESIDUE 0FP D 1560
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1njua_ (A:)
1b: SCOP_d1njub_ (B:)
1c: SCOP_d1njuc_ (C:)
1d: SCOP_d1njud_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
Herpes virus serine proteinase, assemblin
(20)
Superfamily
:
Herpes virus serine proteinase, assemblin
(20)
Family
:
Herpes virus serine proteinase, assemblin
(20)
Protein domain
:
Human cytomegalovirus protease
(15)
Human cytomegalovirus [TaxId: 10359]
(15)
1a
d1njua_
A:
1b
d1njub_
B:
1c
d1njuc_
C:
1d
d1njud_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1njuC00 (C:1004-1256)
1b: CATH_1njuA00 (A:4-256)
1c: CATH_1njuB00 (B:304-556)
1d: CATH_1njuD00 (D:1304-1556)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
Serine Protease, Human Cytomegalovirus Protease; Chain A
(20)
Homologous Superfamily
:
Serine Protease, Human Cytomegalovirus Protease; Chain A
(20)
Human cytomegalovirus (Human herpesvirus 5)
(8)
1a
1njuC00
C:1004-1256
1b
1njuA00
A:4-256
1c
1njuB00
B:304-556
1d
1njuD00
D:1304-1556
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (157 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
Biol.Unit 3 (150 KB)
Header - Biol.Unit 3
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