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1NJT
Biol. Unit 2
Info
Asym.Unit (158 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (76 KB)
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Title
:
COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR
Authors
:
R. Khayat, R. Batra, C. Qian, T. Halmos, M. Bailey, L. Tong
Date
:
02 Jan 03 (Deposition) - 11 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Keywords
:
Protease, Peptidomimetic Inhibitor, Induced-Fit, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Khayat, R. Batra, C. Qian, T. Halmos, M. Bailey, L. Tong
Structural And Biochemical Studies Of Inhibitor Binding To Human Cytomegalovirus Protease
Biochemistry V. 42 885 2003
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
2a: TRIFLUOROMETHANE (CFTa)
2b: TRIFLUOROMETHANE (CFTb)
2c: TRIFLUOROMETHANE (CFTc)
2d: TRIFLUOROMETHANE (CFTd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: N4,N4-DIMETHYL-ASPARAGINE (DMHa)
4b: N4,N4-DIMETHYL-ASPARAGINE (DMHb)
4c: N4,N4-DIMETHYL-ASPARAGINE (DMHc)
4d: N4,N4-DIMETHYL-ASPARAGINE (DMHd)
5a: 3,3-DIMETHYL ASPARTIC ACID (DMKa)
5b: 3,3-DIMETHYL ASPARTIC ACID (DMKb)
5c: 3,3-DIMETHYL ASPARTIC ACID (DMKc)
5d: 3,3-DIMETHYL ASPARTIC ACID (DMKd)
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Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
CFT
2
Mod. Amino Acid
TRIFLUOROMETHANE
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
DMH
2
Mod. Amino Acid
N4,N4-DIMETHYL-ASPARAGINE
5
DMK
2
Mod. Amino Acid
3,3-DIMETHYL ASPARTIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ASN C:1062 , CYS C:1161 , SER C:1162 , ASN C:1224
BINDING SITE FOR RESIDUE CL C 1
2
AC4
SOFTWARE
ASN D:1362 , CYS D:1461 , SER D:1462 , ASN D:1524
BINDING SITE FOR RESIDUE CL D 4
3
AC7
SOFTWARE
HOH C:244 , GLU C:1031 , HIS C:1063 , SER C:1132 , LEU C:1133 , SER C:1134 , SER C:1135 , ARG C:1136 , ARG C:1137 , GLY C:1164 , ARG C:1165 , HOH G:97
BINDING SITE FOR CHAIN G OF PEPTIDOMIMETIC INHIBITOR
4
AC8
SOFTWARE
HOH D:70 , GLU D:1331 , HIS D:1363 , SER D:1432 , LEU D:1433 , SER D:1434 , SER D:1435 , ARG D:1436 , ARG D:1437 , GLY D:1464 , ARG D:1465 , HOH H:140
BINDING SITE FOR CHAIN H OF PEPTIDOMIMETIC INHIBITOR
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1njta_ (A:)
1b: SCOP_d1njtb_ (B:)
1c: SCOP_d1njtc_ (C:)
1d: SCOP_d1njtd_ (D:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Herpes virus serine proteinase, assemblin
(20)
Superfamily
:
Herpes virus serine proteinase, assemblin
(20)
Family
:
Herpes virus serine proteinase, assemblin
(20)
Protein domain
:
Human cytomegalovirus protease
(15)
Human cytomegalovirus [TaxId: 10359]
(15)
1a
d1njta_
A:
1b
d1njtb_
B:
1c
d1njtc_
C:
1d
d1njtd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1njtC00 (C:1004-1256)
1b: CATH_1njtD00 (D:1304-1556)
1c: CATH_1njtA00 (A:3-256)
1d: CATH_1njtB00 (B:302-556)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
Serine Protease, Human Cytomegalovirus Protease; Chain A
(20)
Homologous Superfamily
:
Serine Protease, Human Cytomegalovirus Protease; Chain A
(20)
Human cytomegalovirus (Human herpesvirus 5)
(8)
1a
1njtC00
C:1004-1256
1b
1njtD00
D:1304-1556
1c
1njtA00
A:3-256
1d
1njtB00
B:302-556
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (158 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
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