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1NJT
Asym. Unit
Info
Asym.Unit (158 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (76 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR
Authors
:
R. Khayat, R. Batra, C. Qian, T. Halmos, M. Bailey, L. Tong
Date
:
02 Jan 03 (Deposition) - 11 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Keywords
:
Protease, Peptidomimetic Inhibitor, Induced-Fit, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Khayat, R. Batra, C. Qian, T. Halmos, M. Bailey, L. Tong
Structural And Biochemical Studies Of Inhibitor Binding To Human Cytomegalovirus Protease
Biochemistry V. 42 885 2003
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
2a: TRIFLUOROMETHANE (CFTa)
2b: TRIFLUOROMETHANE (CFTb)
2c: TRIFLUOROMETHANE (CFTc)
2d: TRIFLUOROMETHANE (CFTd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: N4,N4-DIMETHYL-ASPARAGINE (DMHa)
4b: N4,N4-DIMETHYL-ASPARAGINE (DMHb)
4c: N4,N4-DIMETHYL-ASPARAGINE (DMHc)
4d: N4,N4-DIMETHYL-ASPARAGINE (DMHd)
5a: 3,3-DIMETHYL ASPARTIC ACID (DMKa)
5b: 3,3-DIMETHYL ASPARTIC ACID (DMKb)
5c: 3,3-DIMETHYL ASPARTIC ACID (DMKc)
5d: 3,3-DIMETHYL ASPARTIC ACID (DMKd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
4
Mod. Amino Acid
ACETYL GROUP
2
CFT
4
Mod. Amino Acid
TRIFLUOROMETHANE
3
CL
4
Ligand/Ion
CHLORIDE ION
4
DMH
4
Mod. Amino Acid
N4,N4-DIMETHYL-ASPARAGINE
5
DMK
4
Mod. Amino Acid
3,3-DIMETHYL ASPARTIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:62 , CYS A:161 , SER A:162 , ASN A:224
BINDING SITE FOR RESIDUE CL A 257
2
AC2
SOFTWARE
ASN B:362 , CYS B:461 , SER B:462 , ASN B:524
BINDING SITE FOR RESIDUE CL B 2
3
AC3
SOFTWARE
ASN C:1062 , CYS C:1161 , SER C:1162 , ASN C:1224
BINDING SITE FOR RESIDUE CL C 1
4
AC4
SOFTWARE
ASN D:1362 , CYS D:1461 , SER D:1462 , ASN D:1524
BINDING SITE FOR RESIDUE CL D 4
5
AC5
SOFTWARE
GLU A:31 , HIS A:63 , SER A:132 , LEU A:133 , SER A:134 , SER A:135 , ARG A:136 , ARG A:137 , GLY A:164 , ARG A:165 , ARG A:166 , HOH A:273 , HOH A:276 , HOH E:245
BINDING SITE FOR CHAIN E OF PEPTIDOMIMETIC INHIBITOR
6
AC6
SOFTWARE
HOH B:38 , HOH B:74 , GLU B:331 , HIS B:363 , SER B:432 , LEU B:433 , SER B:434 , SER B:435 , ARG B:436 , ARG B:437 , GLY B:464 , ARG B:465 , HOH F:98
BINDING SITE FOR CHAIN F OF PEPTIDOMIMETIC INHIBITOR
7
AC7
SOFTWARE
HOH C:244 , GLU C:1031 , HIS C:1063 , SER C:1132 , LEU C:1133 , SER C:1134 , SER C:1135 , ARG C:1136 , ARG C:1137 , GLY C:1164 , ARG C:1165 , HOH G:97
BINDING SITE FOR CHAIN G OF PEPTIDOMIMETIC INHIBITOR
8
AC8
SOFTWARE
HOH D:70 , GLU D:1331 , HIS D:1363 , SER D:1432 , LEU D:1433 , SER D:1434 , SER D:1435 , ARG D:1436 , ARG D:1437 , GLY D:1464 , ARG D:1465 , HOH H:140
BINDING SITE FOR CHAIN H OF PEPTIDOMIMETIC INHIBITOR
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1njta_ (A:)
1b: SCOP_d1njtb_ (B:)
1c: SCOP_d1njtc_ (C:)
1d: SCOP_d1njtd_ (D:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Herpes virus serine proteinase, assemblin
(20)
Superfamily
:
Herpes virus serine proteinase, assemblin
(20)
Family
:
Herpes virus serine proteinase, assemblin
(20)
Protein domain
:
Human cytomegalovirus protease
(15)
Human cytomegalovirus [TaxId: 10359]
(15)
1a
d1njta_
A:
1b
d1njtb_
B:
1c
d1njtc_
C:
1d
d1njtd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1njtC00 (C:1004-1256)
1b: CATH_1njtD00 (D:1304-1556)
1c: CATH_1njtA00 (A:3-256)
1d: CATH_1njtB00 (B:302-556)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
Serine Protease, Human Cytomegalovirus Protease; Chain A
(20)
Homologous Superfamily
:
Serine Protease, Human Cytomegalovirus Protease; Chain A
(20)
Human cytomegalovirus (Human herpesvirus 5)
(8)
1a
1njtC00
C:1004-1256
1b
1njtD00
D:1304-1556
1c
1njtA00
A:3-256
1d
1njtB00
B:302-556
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Pfam Domains
(0, 0)
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Chain F
Chain G
Chain H
Asymmetric Unit 1
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Asym.Unit (158 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
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