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1NJ9
Biol. Unit 2
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Asym.Unit (139 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
COCAINE HYDROLYTIC ANTIBODY 15A10
Authors
:
N. A. Larsen, P. De Prada, S. X. Deng, X. Zhu, D. W. Landry, I. A. Wilson
Date
:
30 Dec 02 (Deposition) - 17 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: H,L (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Immunoglobulin, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. A. Larsen, P. De Prada, S. X. Deng, A. Mittal, M. Braskett, X. Zhu, I. A. Wilson, D. W. Landry
Crystallographic And Biochemical Analysis Of Cocaine-Degrading Antibody 15A10.
Biochemistry V. 43 8067 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC7 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:28 , TYR A:32 , ALA A:33 , VAL A:50
BINDING SITE FOR RESIDUE NA A 1000
2
AC7
SOFTWARE
LEU B:158
BINDING SITE FOR RESIDUE NA B 1007
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1nj9b2 (B:114-212)
1b: SCOP_d1nj9h2 (H:114-212)
2a: SCOP_d1nj9a2 (A:109-210)
2b: SCOP_d1nj9l2 (L:109-210)
3a: SCOP_d1nj9b1 (B:1-113)
3b: SCOP_d1nj9h1 (H:1-113)
4a: SCOP_d1nj9a1 (A:1-108)
4b: SCOP_d1nj9l1 (L:1-108)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1nj9b2
B:114-212
1b
d1nj9h2
H:114-212
Protein domain
:
Immunoglobulin light chain lambda constant domain, CL-lambda
(68)
Human (Homo sapiens) [TaxId: 9606]
(46)
2a
d1nj9a2
A:109-210
2b
d1nj9l2
L:109-210
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1nj9b1
B:1-113
3b
d1nj9h1
H:1-113
Protein domain
:
Immunoglobulin light chain lambda variable domain, VL-lambda
(89)
Mouse (Mus musculus) [TaxId: 10090]
(35)
4a
d1nj9a1
A:1-108
4b
d1nj9l1
L:1-108
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1nj9H02 (H:114-212)
1b: CATH_1nj9B02 (B:114-211)
1c: CATH_1nj9A01 (A:1-109)
1d: CATH_1nj9L01 (L:1-109)
1e: CATH_1nj9B01 (B:1-113)
1f: CATH_1nj9H01 (H:1-113)
1g: CATH_1nj9A02 (A:110-208)
1h: CATH_1nj9L02 (L:110-208)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1nj9H02
H:114-212
1b
1nj9B02
B:114-211
1c
1nj9A01
A:1-109
1d
1nj9L01
L:1-109
1e
1nj9B01
B:1-113
1f
1nj9H01
H:1-113
1g
1nj9A02
A:110-208
1h
1nj9L02
L:110-208
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
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