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1NIW
Biol. Unit 5
Info
Asym.Unit (123 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 3 (32 KB)
Biol.Unit 4 (32 KB)
Biol.Unit 5 (113 KB)
Biol.Unit 6 (114 KB)
Biol.Unit 7 (59 KB)
Biol.Unit 8 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENDOTHELIAL NITRIC OXIDE SYNTHASE PEPTIDE BOUND TO CALMODULIN
Authors
:
M. Aoyagi, A. S. Arvai, J. A. Tainer, E. D. Getzoff
Date
:
26 Dec 02 (Deposition) - 18 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Biol. Unit 6: A,B,C,D,E,F,G,H (1x)
Biol. Unit 7: C,D,G,H (1x)
Biol. Unit 8: A,B,E,F (1x)
Keywords
:
Nitric Oxide, Calcium-Binding Protein, Nos, Signaling Protein/Oxidoreductase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Aoyagi, A. S. Arvai, J. A. Tainer, E. D. Getzoff
Structural Basis For Endothelial Nitric Oxide Synthase Binding To Calmodulin
Embo J. V. 22 766 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 21)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , GLU A:31 , HOH A:3002
BINDING SITE FOR RESIDUE CA A 1001
02
AC2
SOFTWARE
ASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , GLU A:67
BINDING SITE FOR RESIDUE CA A 1002
03
AC3
SOFTWARE
ASP A:93 , ASP A:95 , ASN A:97 , TYR A:99 , GLU A:104
BINDING SITE FOR RESIDUE CA A 1003
04
AC4
SOFTWARE
ASP A:129 , ASP A:131 , ASP A:133 , GLN A:135 , GLU A:140 , HOH A:3014
BINDING SITE FOR RESIDUE CA A 1004
05
AC5
SOFTWARE
ASP C:20 , ASP C:22 , ASP C:24 , THR C:26 , GLU C:31
BINDING SITE FOR RESIDUE CA C 1005
06
AC6
SOFTWARE
ASP C:56 , ASP C:58 , ASN C:60 , THR C:62 , GLU C:67
BINDING SITE FOR RESIDUE CA C 1006
07
AC7
SOFTWARE
ASP C:93 , ASP C:95 , ASN C:97 , TYR C:99 , GLU C:104 , HOH C:3021
BINDING SITE FOR RESIDUE CA C 1007
08
AC8
SOFTWARE
ASP C:129 , ASP C:131 , ASP C:133 , GLN C:135 , GLU C:140 , HOH C:3030
BINDING SITE FOR RESIDUE CA C 1008
09
AC9
SOFTWARE
ASP E:20 , ASP E:22 , ASP E:24 , THR E:26 , GLU E:31 , HOH E:3031
BINDING SITE FOR RESIDUE CA E 1009
10
BC1
SOFTWARE
ASP E:56 , ASP E:58 , ASN E:60 , THR E:62 , GLU E:67
BINDING SITE FOR RESIDUE CA E 1010
11
BC2
SOFTWARE
ASP E:93 , ASP E:95 , ASN E:97 , TYR E:99 , GLU E:104 , HOH E:3033
BINDING SITE FOR RESIDUE CA E 1011
12
BC3
SOFTWARE
ASP E:129 , ASP E:131 , ASP E:133 , GLN E:135 , GLU E:140 , HOH E:3044
BINDING SITE FOR RESIDUE CA E 1012
13
BC4
SOFTWARE
SER A:101 , ALA A:103 , GLU A:104 , HOH A:3171 , ALA E:102 , ARG E:106
BINDING SITE FOR RESIDUE SO4 A 4001
14
BC5
SOFTWARE
ASP G:20 , ASP G:22 , ASP G:24 , THR G:26 , GLU G:31
BINDING SITE FOR RESIDUE CA G 1013
15
BC6
SOFTWARE
ASP G:56 , ASP G:58 , ASN G:60 , THR G:62 , GLU G:67 , HOH G:3046
BINDING SITE FOR RESIDUE CA G 1014
16
BC7
SOFTWARE
ASP G:93 , ASP G:95 , ASN G:97 , TYR G:99 , GLU G:104 , HOH G:3048
BINDING SITE FOR RESIDUE CA G 1015
17
BC8
SOFTWARE
ASP G:129 , ASP G:131 , ASP G:133 , GLN G:135 , GLU G:140 , HOH G:3241
BINDING SITE FOR RESIDUE CA G 1016
18
BC9
SOFTWARE
HOH A:3015 , GLY C:98 , ASN C:137 , TYR C:138 , HOH C:3069 , HOH C:3102
BINDING SITE FOR RESIDUE EDO C 5001
19
CC1
SOFTWARE
ARG C:126 , GLU C:127 , ILE C:130
BINDING SITE FOR RESIDUE EDO C 5002
20
CC2
SOFTWARE
LEU E:39 , GLU E:87 , ARG E:90
BINDING SITE FOR RESIDUE EDO E 5003
21
CC3
SOFTWARE
GLY E:98 , TYR E:99 , ASN E:137 , TYR E:138 , HOH E:3154
BINDING SITE FOR RESIDUE EDO E 5004
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 96)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:7-42,C:7-42,E:7-42,A:43-78,C:43-...)
2: EF_HAND_1 (A:20-32,C:20-32,E:20-32,A:56-68,C:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM3_RAT
8-43
44-79
81-116
117-149
16
A:7-42
C:7-42
E:7-42
G:7-42
A:43-78
C:43-78
E:43-78
G:43-78
A:80-115
C:80-115
E:80-115
G:80-115
A:116-147
C:116-147
E:116-147
G:116-147
CALM1_RAT
8-43
44-79
81-116
117-149
16
A:7-42
C:7-42
E:7-42
G:7-42
A:43-78
C:43-78
E:43-78
G:43-78
A:80-115
C:80-115
E:80-115
G:80-115
A:116-147
C:116-147
E:116-147
G:116-147
CALM2_RAT
8-43
44-79
81-116
117-149
16
A:7-42
C:7-42
E:7-42
G:7-42
A:43-78
C:43-78
E:43-78
G:43-78
A:80-115
C:80-115
E:80-115
G:80-115
A:116-147
C:116-147
E:116-147
G:116-147
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM3_RAT
21-33
57-69
94-106
130-142
16
A:20-32
C:20-32
E:20-32
G:20-32
A:56-68
C:56-68
E:56-68
G:56-68
A:93-105
C:93-105
E:93-105
G:93-105
A:129-141
C:129-141
E:129-141
G:129-141
CALM1_RAT
21-33
57-69
94-106
130-142
16
A:20-32
C:20-32
E:20-32
G:20-32
A:56-68
C:56-68
E:56-68
G:56-68
A:93-105
C:93-105
E:93-105
G:93-105
A:129-141
C:129-141
E:129-141
G:129-141
CALM2_RAT
21-33
57-69
94-106
130-142
16
A:20-32
C:20-32
E:20-32
G:20-32
A:56-68
C:56-68
E:56-68
G:56-68
A:93-105
C:93-105
E:93-105
G:93-105
A:129-141
C:129-141
E:129-141
G:129-141
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1niwa_ (A:)
1b: SCOP_d1niwc_ (C:)
1c: SCOP_d1niwe_ (E:)
1d: SCOP_d1niwg_ (G:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(15)
1a
d1niwa_
A:
1b
d1niwc_
C:
1c
d1niwe_
E:
1d
d1niwg_
G:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1niwA01 (A:5-78)
1b: CATH_1niwC01 (C:5-78)
1c: CATH_1niwE01 (E:5-78)
1d: CATH_1niwG01 (G:5-78)
1e: CATH_1niwA02 (A:79-139)
1f: CATH_1niwC02 (C:79-139)
1g: CATH_1niwE02 (E:79-139)
1h: CATH_1niwG02 (G:79-139)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
1a
1niwA01
A:5-78
1b
1niwC01
C:5-78
1c
1niwE01
E:5-78
1d
1niwG01
G:5-78
1e
1niwA02
A:79-139
1f
1niwC02
C:79-139
1g
1niwE02
E:79-139
1h
1niwG02
G:79-139
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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