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1NIW
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 3 (32 KB)
Biol.Unit 4 (32 KB)
Biol.Unit 5 (113 KB)
Biol.Unit 6 (114 KB)
Biol.Unit 7 (59 KB)
Biol.Unit 8 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENDOTHELIAL NITRIC OXIDE SYNTHASE PEPTIDE BOUND TO CALMODULIN
Authors
:
M. Aoyagi, A. S. Arvai, J. A. Tainer, E. D. Getzoff
Date
:
26 Dec 02 (Deposition) - 18 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Biol. Unit 6: A,B,C,D,E,F,G,H (1x)
Biol. Unit 7: C,D,G,H (1x)
Biol. Unit 8: A,B,E,F (1x)
Keywords
:
Nitric Oxide, Calcium-Binding Protein, Nos, Signaling Protein/Oxidoreductase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Aoyagi, A. S. Arvai, J. A. Tainer, E. D. Getzoff
Structural Basis For Endothelial Nitric Oxide Synthase Binding To Calmodulin
Embo J. V. 22 766 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 57)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
16
Ligand/Ion
CALCIUM ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
36
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , GLU A:31 , HOH A:3002
BINDING SITE FOR RESIDUE CA A 1001
02
AC2
SOFTWARE
ASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , GLU A:67
BINDING SITE FOR RESIDUE CA A 1002
03
AC3
SOFTWARE
ASP A:93 , ASP A:95 , ASN A:97 , TYR A:99 , GLU A:104
BINDING SITE FOR RESIDUE CA A 1003
04
AC4
SOFTWARE
ASP A:129 , ASP A:131 , ASP A:133 , GLN A:135 , GLU A:140 , HOH A:3014
BINDING SITE FOR RESIDUE CA A 1004
05
AC5
SOFTWARE
ASP C:20 , ASP C:22 , ASP C:24 , THR C:26 , GLU C:31
BINDING SITE FOR RESIDUE CA C 1005
06
AC6
SOFTWARE
ASP C:56 , ASP C:58 , ASN C:60 , THR C:62 , GLU C:67
BINDING SITE FOR RESIDUE CA C 1006
07
AC7
SOFTWARE
ASP C:93 , ASP C:95 , ASN C:97 , TYR C:99 , GLU C:104 , HOH C:3021
BINDING SITE FOR RESIDUE CA C 1007
08
AC8
SOFTWARE
ASP C:129 , ASP C:131 , ASP C:133 , GLN C:135 , GLU C:140 , HOH C:3030
BINDING SITE FOR RESIDUE CA C 1008
09
AC9
SOFTWARE
ASP E:20 , ASP E:22 , ASP E:24 , THR E:26 , GLU E:31 , HOH E:3031
BINDING SITE FOR RESIDUE CA E 1009
10
BC1
SOFTWARE
ASP E:56 , ASP E:58 , ASN E:60 , THR E:62 , GLU E:67
BINDING SITE FOR RESIDUE CA E 1010
11
BC2
SOFTWARE
ASP E:93 , ASP E:95 , ASN E:97 , TYR E:99 , GLU E:104 , HOH E:3033
BINDING SITE FOR RESIDUE CA E 1011
12
BC3
SOFTWARE
ASP E:129 , ASP E:131 , ASP E:133 , GLN E:135 , GLU E:140 , HOH E:3044
BINDING SITE FOR RESIDUE CA E 1012
13
BC4
SOFTWARE
SER A:101 , ALA A:103 , GLU A:104 , HOH A:3171 , ALA E:102 , ARG E:106
BINDING SITE FOR RESIDUE SO4 A 4001
14
BC5
SOFTWARE
ASP G:20 , ASP G:22 , ASP G:24 , THR G:26 , GLU G:31
BINDING SITE FOR RESIDUE CA G 1013
15
BC6
SOFTWARE
ASP G:56 , ASP G:58 , ASN G:60 , THR G:62 , GLU G:67 , HOH G:3046
BINDING SITE FOR RESIDUE CA G 1014
16
BC7
SOFTWARE
ASP G:93 , ASP G:95 , ASN G:97 , TYR G:99 , GLU G:104 , HOH G:3048
BINDING SITE FOR RESIDUE CA G 1015
17
BC8
SOFTWARE
ASP G:129 , ASP G:131 , ASP G:133 , GLN G:135 , GLU G:140 , HOH G:3241
BINDING SITE FOR RESIDUE CA G 1016
18
BC9
SOFTWARE
HOH A:3015 , GLY C:98 , ASN C:137 , TYR C:138 , HOH C:3069 , HOH C:3102
BINDING SITE FOR RESIDUE EDO C 5001
19
CC1
SOFTWARE
ARG C:126 , GLU C:127 , ILE C:130
BINDING SITE FOR RESIDUE EDO C 5002
20
CC2
SOFTWARE
LEU E:39 , GLU E:87 , ARG E:90
BINDING SITE FOR RESIDUE EDO E 5003
21
CC3
SOFTWARE
GLY E:98 , TYR E:99 , ASN E:137 , TYR E:138 , HOH E:3154
BINDING SITE FOR RESIDUE EDO E 5004
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 32)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:7-42,C:7-42,E:7-42,G:7-42|A:43-7...)
2: EF_HAND_1 (A:20-32,C:20-32,E:20-32,G:20-32|A:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM3_RAT
8-43
44-79
81-116
117-149
16
A:7-42
C:7-42
E:7-42
G:7-42
A:43-78
C:43-78
E:43-78
G:43-78
A:80-115
C:80-115
E:80-115
G:80-115
A:116-147
C:116-147
E:116-147
G:116-147
CALM1_RAT
8-43
44-79
81-116
117-149
16
A:7-42
C:7-42
E:7-42
G:7-42
A:43-78
C:43-78
E:43-78
G:43-78
A:80-115
C:80-115
E:80-115
G:80-115
A:116-147
C:116-147
E:116-147
G:116-147
CALM2_RAT
8-43
44-79
81-116
117-149
16
A:7-42
C:7-42
E:7-42
G:7-42
A:43-78
C:43-78
E:43-78
G:43-78
A:80-115
C:80-115
E:80-115
G:80-115
A:116-147
C:116-147
E:116-147
G:116-147
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM3_RAT
21-33
57-69
94-106
130-142
16
A:20-32
C:20-32
E:20-32
G:20-32
A:56-68
C:56-68
E:56-68
G:56-68
A:93-105
C:93-105
E:93-105
G:93-105
A:129-141
C:129-141
E:129-141
G:129-141
CALM1_RAT
21-33
57-69
94-106
130-142
16
A:20-32
C:20-32
E:20-32
G:20-32
A:56-68
C:56-68
E:56-68
G:56-68
A:93-105
C:93-105
E:93-105
G:93-105
A:129-141
C:129-141
E:129-141
G:129-141
CALM2_RAT
21-33
57-69
94-106
130-142
16
A:20-32
C:20-32
E:20-32
G:20-32
A:56-68
C:56-68
E:56-68
G:56-68
A:93-105
C:93-105
E:93-105
G:93-105
A:129-141
C:129-141
E:129-141
G:129-141
[
close PROSITE info
]
Exons
(7, 28)
Info
All Exons
Exon 1.2 (A:3-11 | C:3-11 | E:3-11 | G:3-11)
Exon 1.3 (A:11-59 | C:11-59 | E:11-59 | G:11...)
Exon 1.4 (A:59-94 | C:59-94 | E:59-94 | G:59...)
Exon 1.5 (A:95-140 | C:95-140 | E:95-140 | G...)
Exon 1.6 (A:140-147 | C:140-147 | E:140-147 ...)
Exon 2.12 (B:492-501 | D:492-501 | F:492-501 ...)
Exon 2.13a (B:501-510 | D:501-510 | F:501-510 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 2.11/2.12
8: Boundary 2.12/2.13a
9: Boundary 2.13a/2.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000022603
1
ENSRNOE00000444589
chr1:
77252808-77252705
104
CALM3_RAT
1-1
1
0
-
-
1.2
ENSRNOT00000022603
2
ENSRNOE00000354112
chr1:
77248702-77248672
31
CALM3_RAT
2-12
11
4
A:3-11
C:3-11
E:3-11
G:3-11
9
9
9
9
1.3
ENSRNOT00000022603
3
ENSRNOE00000337344
chr1:
77246477-77246334
144
CALM3_RAT
12-60
49
4
A:11-59
C:11-59
E:11-59
G:11-59
49
49
49
49
1.4
ENSRNOT00000022603
4
ENSRNOE00000316778
chr1:
77246246-77246140
107
CALM3_RAT
60-95
36
4
A:59-94
C:59-94
E:59-94
G:59-94
36
36
36
36
1.5
ENSRNOT00000022603
5
ENSRNOE00000294358
chr1:
77246001-77245866
136
CALM3_RAT
96-141
46
4
A:95-140
C:95-140
E:95-140
G:95-140
46
46
46
46
1.6
ENSRNOT00000022603
6
ENSRNOE00000161097
chr1:
77245776-77245475
302
CALM3_RAT
141-149
9
4
A:140-147
C:140-147
E:140-147
G:140-147
8
8
8
8
1.7
ENSRNOT00000022603
7
ENSRNOE00000437380
chr1:
77244456-77244169
288
CALM3_RAT
-
0
0
-
-
2.1a
ENST00000297494
1a
ENSE00001851539
chr7:
150688083-150688388
306
NOS3_HUMAN
-
0
0
-
-
2.2a
ENST00000297494
2a
ENSE00001141361
chr7:
150690841-150691049
209
NOS3_HUMAN
1-53
53
0
-
-
2.3
ENST00000297494
3
ENSE00001088156
chr7:
150692291-150692402
112
NOS3_HUMAN
53-90
38
0
-
-
2.4
ENST00000297494
4
ENSE00001088160
chr7:
150693492-150693640
149
NOS3_HUMAN
91-140
50
0
-
-
2.5
ENST00000297494
5
ENSE00001088158
chr7:
150693851-150694013
163
NOS3_HUMAN
140-194
55
0
-
-
2.6
ENST00000297494
6
ENSE00001088152
chr7:
150695445-150695536
92
NOS3_HUMAN
195-225
31
0
-
-
2.7
ENST00000297494
7
ENSE00001088131
chr7:
150695627-150695768
142
NOS3_HUMAN
225-272
48
0
-
-
2.8
ENST00000297494
8
ENSE00001088139
chr7:
150696034-150696173
140
NOS3_HUMAN
273-319
47
0
-
-
2.9
ENST00000297494
9
ENSE00001088150
chr7:
150696278-150696452
175
NOS3_HUMAN
319-377
59
0
-
-
2.10
ENST00000297494
10
ENSE00001088154
chr7:
150697586-150697687
102
NOS3_HUMAN
378-411
34
0
-
-
2.11
ENST00000297494
11
ENSE00001088133
chr7:
150698319-150698513
195
NOS3_HUMAN
412-476
65
0
-
-
2.12
ENST00000297494
12
ENSE00001088163
chr7:
150698632-150698705
74
NOS3_HUMAN
477-501
25
4
B:492-501
D:492-501
F:492-501
H:492-501
10
10
10
10
2.13a
ENST00000297494
13a
ENSE00001088143
chr7:
150698909-150699053
145
NOS3_HUMAN
501-549
49
4
B:501-510
D:501-510
F:501-510
H:501-510
10
10
10
10
2.14
ENST00000297494
14
ENSE00001088146
chr7:
150699288-150699392
105
NOS3_HUMAN
550-584
35
0
-
-
2.17
ENST00000297494
17
ENSE00001088120
chr7:
150703515-150703582
68
NOS3_HUMAN
585-607
23
0
-
-
2.18
ENST00000297494
18
ENSE00001088124
chr7:
150703977-150704093
117
NOS3_HUMAN
607-646
40
0
-
-
2.19
ENST00000297494
19
ENSE00001088128
chr7:
150704190-150704364
175
NOS3_HUMAN
646-704
59
0
-
-
2.20b
ENST00000297494
20b
ENSE00001088161
chr7:
150706018-150706150
133
NOS3_HUMAN
705-749
45
0
-
-
2.21b
ENST00000297494
21b
ENSE00001088141
chr7:
150706277-150706355
79
NOS3_HUMAN
749-775
27
0
-
-
2.22b
ENST00000297494
22b
ENSE00001088117
chr7:
150706486-150706673
188
NOS3_HUMAN
775-838
64
0
-
-
2.23
ENST00000297494
23
ENSE00001088144
chr7:
150707203-150707375
173
NOS3_HUMAN
838-895
58
0
-
-
2.24c
ENST00000297494
24c
ENSE00001088137
chr7:
150707685-150707895
211
NOS3_HUMAN
896-966
71
0
-
-
2.24d
ENST00000297494
24d
ENSE00001088135
chr7:
150707987-150708074
88
NOS3_HUMAN
966-995
30
0
-
-
2.26b
ENST00000297494
26b
ENSE00001088114
chr7:
150709439-150709560
122
NOS3_HUMAN
995-1036
42
0
-
-
2.27d
ENST00000297494
27d
ENSE00001088122
chr7:
150710319-150710467
149
NOS3_HUMAN
1036-1085
50
0
-
-
2.28a
ENST00000297494
28a
ENSE00001088159
chr7:
150710812-150711006
195
NOS3_HUMAN
1086-1150
65
0
-
-
2.28g
ENST00000297494
28g
ENSE00001141355
chr7:
150711096-150711676
581
NOS3_HUMAN
1151-1203
53
0
-
-
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1niwa_ (A:)
1b: SCOP_d1niwc_ (C:)
1c: SCOP_d1niwe_ (E:)
1d: SCOP_d1niwg_ (G:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(15)
1a
d1niwa_
A:
1b
d1niwc_
C:
1c
d1niwe_
E:
1d
d1niwg_
G:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1niwA01 (A:5-78)
1b: CATH_1niwC01 (C:5-78)
1c: CATH_1niwE01 (E:5-78)
1d: CATH_1niwG01 (G:5-78)
1e: CATH_1niwA02 (A:79-139)
1f: CATH_1niwC02 (C:79-139)
1g: CATH_1niwE02 (E:79-139)
1h: CATH_1niwG02 (G:79-139)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
1a
1niwA01
A:5-78
1b
1niwC01
C:5-78
1c
1niwE01
E:5-78
1d
1niwG01
G:5-78
1e
1niwA02
A:79-139
1f
1niwC02
C:79-139
1g
1niwE02
E:79-139
1h
1niwG02
G:79-139
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Asymmetric Unit 1
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