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1NG9
Asym. Unit
Info
Asym.Unit (275 KB)
Biol.Unit 1 (265 KB)
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(1)
Title
:
E.COLI MUTS R697A: AN ATPASE-ASYMMETRY MUTANT
Authors
:
M. H. Lamers, H. H. K. Winterwerp, T. K. Sixma
Date
:
17 Dec 02 (Deposition) - 11 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B,E,F (1x)
Keywords
:
Abc Atpase, Alternating Atpase, Asymmetry, Dna Repair, Dna Binding, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Lamers, H. H. K. Winterwerp, T. K. Sixma
The Alternating Atpase Domains Of Muts Control Dna Mismatch Repair
Embo J. V. 22 746 2003
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:621 , ADP A:2001 , HOH A:2163 , HOH A:2164 , HOH A:2165 , HOH A:2166
BINDING SITE FOR RESIDUE MG A 1001
2
AC2
SOFTWARE
SER B:621 , ASP B:693 , ADP B:2002 , HOH B:2191 , HOH B:2192 , HOH B:2193 , HOH B:2194
BINDING SITE FOR RESIDUE MG B 1002
3
AC3
SOFTWARE
LEU A:592 , PHE A:596 , ILE A:597 , PRO A:615 , ASN A:616 , MET A:617 , GLY A:618 , GLY A:619 , LYS A:620 , SER A:621 , THR A:622 , HIS A:760 , MG A:1001 , HOH A:2109 , HOH A:2163 , HOH A:2165
BINDING SITE FOR RESIDUE ADP A 2001
4
AC4
SOFTWARE
VAL B:588 , PHE B:596 , ILE B:597 , ASN B:599 , PRO B:615 , MET B:617 , GLY B:618 , GLY B:619 , LYS B:620 , SER B:621 , THR B:622 , HIS B:760 , MG B:1002 , HOH B:2179 , HOH B:2191 , HOH B:2193 , HOH B:2194
BINDING SITE FOR RESIDUE ADP B 2002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DNA_MISMATCH_REPAIR_2 (A:688-704,B:688-704)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_MISMATCH_REPAIR_2
PS00486
DNA mismatch repair proteins mutS family signature.
MUTS_ECOLI
688-704
2
A:688-704
B:688-704
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1ng9a1 (A:270-566)
1b: SCOP_d1ng9b1 (B:270-566)
2a: SCOP_d1ng9a4 (A:1-116)
2b: SCOP_d1ng9b4 (B:9-116)
3a: SCOP_d1ng9a2 (A:567-800)
3b: SCOP_d1ng9b2 (B:567-800)
4a: SCOP_d1ng9a3 (A:117-269)
4b: SCOP_d1ng9b3 (B:117-269)
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Classes
(
)
(
)
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA repair protein MutS, domain III
(14)
Superfamily
:
DNA repair protein MutS, domain III
(14)
Family
:
DNA repair protein MutS, domain III
(12)
Protein domain
:
DNA repair protein MutS, domain III
(12)
Escherichia coli [TaxId: 562]
(8)
1a
d1ng9a1
A:270-566
1b
d1ng9b1
B:270-566
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MutS N-terminal domain-like
(18)
Superfamily
:
DNA repair protein MutS, domain I
(13)
Family
:
DNA repair protein MutS, domain I
(11)
Protein domain
:
DNA repair protein MutS, domain I
(11)
Escherichia coli [TaxId: 562]
(8)
2a
d1ng9a4
A:1-116
2b
d1ng9b4
B:9-116
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
DNA repair protein MutS, the C-terminal domain
(12)
Escherichia coli [TaxId: 562]
(8)
3a
d1ng9a2
A:567-800
3b
d1ng9b2
B:567-800
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
DNA repair protein MutS, domain II
(14)
Family
:
DNA repair protein MutS, domain II
(12)
Protein domain
:
DNA repair protein MutS, domain II
(12)
Escherichia coli [TaxId: 562]
(8)
4a
d1ng9a3
A:117-269
4b
d1ng9b3
B:117-269
[
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1ng9A02 (A:130-265)
1b: CATH_1ng9B02 (B:130-265)
2a: CATH_1ng9B01 (B:9-124)
2b: CATH_1ng9A01 (A:1-124)
3a: CATH_1ng9B05 (B:567-800)
3b: CATH_1ng9A05 (A:567-800)
4a: CATH_1ng9A03 (A:266-384,A:538-566)
4b: CATH_1ng9B03 (B:266-384,B:538-566)
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.110, no name defined]
(14)
[unclassified]
(4)
1a
1ng9A02
A:130-265
1b
1ng9B02
B:130-265
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
MutS, DNA mismatch repair protein, domain I
(15)
Homologous Superfamily
:
[code=3.40.1170.10, no name defined]
(13)
[unclassified]
(4)
2a
1ng9B01
B:9-124
2b
1ng9A01
A:1-124
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
[unclassified]
(24)
3a
1ng9B05
B:567-800
3b
1ng9A05
A:567-800
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
MutS, DNA mismatch repair protein; Chain A, domain 3
(14)
Homologous Superfamily
:
[code=1.10.1420.10, no name defined]
(14)
[unclassified]
(4)
4a
1ng9A03
A:266-384,A:538-566
4b
1ng9B03
B:266-384,B:538-566
[
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Pfam Domains
(5, 10)
Info
all PFAM domains
1a: PFAM_MutS_V_1ng9B01 (B:567-799)
1b: PFAM_MutS_V_1ng9B02 (B:567-799)
2a: PFAM_MutS_III_1ng9B03 (B:271-560)
2b: PFAM_MutS_III_1ng9B04 (B:271-560)
3a: PFAM_MutS_II_1ng9B05 (B:131-256)
3b: PFAM_MutS_II_1ng9B06 (B:131-256)
4a: PFAM_MutS_IV_1ng9B07 (B:428-519)
4b: PFAM_MutS_IV_1ng9B08 (B:428-519)
5a: PFAM_MutS_I_1ng9B09 (B:11-123)
5b: PFAM_MutS_I_1ng9B10 (B:11-123)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
MutS_V
(16)
Escherichia coli (strain K12)
(10)
1a
MutS_V-1ng9B01
B:567-799
1b
MutS_V-1ng9B02
B:567-799
Clan
:
no clan defined [family: MutS_III]
(16)
Family
:
MutS_III
(16)
Escherichia coli (strain K12)
(10)
2a
MutS_III-1ng9B03
B:271-560
2b
MutS_III-1ng9B04
B:271-560
Clan
:
no clan defined [family: MutS_II]
(16)
Family
:
MutS_II
(16)
Escherichia coli (strain K12)
(10)
3a
MutS_II-1ng9B05
B:131-256
3b
MutS_II-1ng9B06
B:131-256
Clan
:
no clan defined [family: MutS_IV]
(16)
Family
:
MutS_IV
(16)
Escherichia coli (strain K12)
(10)
4a
MutS_IV-1ng9B07
B:428-519
4b
MutS_IV-1ng9B08
B:428-519
Clan
:
no clan defined [family: MutS_I]
(16)
Family
:
MutS_I
(16)
Escherichia coli (strain K12)
(10)
5a
MutS_I-1ng9B09
B:11-123
5b
MutS_I-1ng9B10
B:11-123
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Asymmetric Unit 1
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