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1NG3
Biol. Unit 1
Info
Asym.Unit (127 KB)
Biol.Unit 1 (238 KB)
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(1)
Title
:
COMPLEX OF THIO (GLYCINE OXIDASE) WITH ACETYL-GLYCINE
Authors
:
E. C. Settembre, P. C. Dorrestein, J. Park, A. Augustine, T. P. Begley, S
Date
:
16 Dec 02 (Deposition) - 08 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Flavoprotein, Oxidase, Oxidoreductase
(Keyword Search:
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)
Reference
:
E. C. Settembre, P. C. Dorrestein, J. Park, A. Augustine, T. P. Begley, S. E. Ealick
Structural And Mechanistic Studies On Thio, A Glycine Oxidase Essential For Thiamin Biosynthesis In Bacillus Subtilis
Biochemistry V. 42 2971 2003
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: ACETYLAMINO-ACETIC ACID (AACa)
1b: ACETYLAMINO-ACETIC ACID (AACb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: PHOSPHATE ION (PO4a)
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Label:
No.
Name
Count
Type
Full Name
1
AAC
4
Ligand/Ion
ACETYLAMINO-ACETIC ACID
2
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:89 , ARG A:254 , ARG B:89 , ARG B:254
BINDING SITE FOR RESIDUE PO4 A 402
2
AC2
SOFTWARE
GLY A:11 , GLY A:13 , ILE A:14 , ILE A:15 , PHE A:33 , GLU A:34 , SER A:35 , ARG A:41 , THR A:42 , THR A:43 , ALA A:46 , ALA A:47 , GLY A:48 , MET A:49 , VAL A:174 , SER A:202 , GLY A:203 , TRP A:205 , PHE A:209 , CYS A:226 , TYR A:246 , GLY A:300 , ARG A:302 , HIS A:327 , PHE A:328 , ARG A:329 , ASN A:330 , GLY A:331 , ILE A:332 , LEU A:333 , AAC A:401 , HOH A:403 , HOH A:405 , HOH A:409 , HOH A:410 , HOH A:438
BINDING SITE FOR RESIDUE FAD A 400
3
AC3
SOFTWARE
MET A:49 , TYR A:241 , TYR A:246 , ALA A:259 , ARG A:302 , ARG A:329 , FAD A:400
BINDING SITE FOR RESIDUE AAC A 401
4
AC4
SOFTWARE
GLY B:11 , GLY B:13 , ILE B:14 , ILE B:15 , PHE B:33 , GLU B:34 , SER B:35 , ARG B:41 , THR B:42 , THR B:43 , ALA B:46 , ALA B:47 , GLY B:48 , MET B:49 , VAL B:174 , SER B:202 , GLY B:203 , TRP B:205 , PHE B:209 , CYS B:226 , TYR B:246 , GLY B:300 , ARG B:302 , HIS B:327 , PHE B:328 , ARG B:329 , ASN B:330 , GLY B:331 , ILE B:332 , LEU B:333 , AAC B:501 , HOH B:502 , HOH B:504 , HOH B:505 , HOH B:543
BINDING SITE FOR RESIDUE FAD B 500
5
AC5
SOFTWARE
MET B:49 , GLU B:55 , TYR B:241 , TYR B:246 , ALA B:259 , ARG B:302 , ARG B:329 , FAD B:500 , HOH B:514
BINDING SITE FOR RESIDUE AAC B 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ng3a2 (A:219-306)
1b: SCOP_d1ng3b2 (B:219-306)
2a: SCOP_d1ng3a1 (A:1-218,A:307-364)
2b: SCOP_d1ng3b1 (B:1-218,B:307-364)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
D-aminoacid oxidase-like
(29)
Protein domain
:
Glycine oxidase ThiO
(3)
Bacillus sp. [TaxId: 1409]
(3)
1a
d1ng3a2
A:219-306
1b
d1ng3b2
B:219-306
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Glycine oxidase ThiO
(3)
Bacillus sp. [TaxId: 1409]
(3)
2a
d1ng3a1
A:1-218,A:307-364
2b
d1ng3b1
B:1-218,B:307-364
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ng3A02 (A:92-144,A:219-305)
1b: CATH_1ng3B02 (B:92-144,B:219-305)
2a: CATH_1ng3A01 (A:1-91,A:145-218,A:306-364)
2b: CATH_1ng3B01 (B:1-91,B:145-218,B:306-364)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
Bacillus subtilis. Organism_taxid: 1423.
(4)
1a
1ng3A02
A:92-144,A:219-305
1b
1ng3B02
B:92-144,B:219-305
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Bacillus subtilis. Organism_taxid: 1423.
(4)
2a
1ng3A01
A:1-91,A:145-218,A:306-364
2b
1ng3B01
B:1-91,B:145-218,B:306-364
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Pfam Domains
(0, 0)
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Asym.Unit (127 KB)
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Header - Biol.Unit 1
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