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1NG1
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
N AND GTPASE DOMAINS OF THE SIGNAL SEQUENCE RECOGNITION PROTEIN FFH FROM THERMUS AQUATICUS
Authors
:
D. M. Freymann, R. M. Stroud, P. Walter
Date
:
30 Apr 98 (Deposition) - 30 Jul 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ffh, Srp, Gtpase, Signal Recognition Particle, Gdp, Mg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Freymann, R. J. Keenan, R. M. Stroud, P. Walter
Functional Changes In The Structure Of The Srp Gtpase On Binding Gdp And Mg2+Gdp.
Nat. Struct. Biol. V. 6 793 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 13)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
4a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
4
Ligand/Ion
ACETIC ACID
2
CD
3
Ligand/Ion
CADMIUM ION
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
5
MG
2
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:11 , GLU A:33 , GLU A:46 , ASP A:50
BINDING SITE FOR RESIDUE CD A 701
02
AC2
SOFTWARE
GLU A:285
BINDING SITE FOR RESIDUE CD A 751
03
AC3
SOFTWARE
HIS A:261 , ACY A:952 , HOH A:1126 , HOH A:1127
BINDING SITE FOR RESIDUE CD A 752
04
AC4
SOFTWARE
THR A:112 , GDP A:900 , HOH A:1138 , HOH A:1139 , HOH A:1140 , HOH A:1141
BINDING SITE FOR RESIDUE MG A 902
05
AC5
SOFTWARE
HOH A:1142 , HOH A:1143 , HOH A:1144 , HOH A:1145 , HOH A:1146 , HOH A:1147
BINDING SITE FOR RESIDUE MG A 912
06
AC6
SOFTWARE
LEU A:106 , GLY A:108 , SER A:109 , GLY A:110 , LYS A:111 , THR A:112 , THR A:113 , LYS A:117 , LYS A:246 , ASP A:248 , GLY A:271 , VAL A:272 , SER A:273 , GLU A:274 , MG A:902 , HOH A:1000 , HOH A:1030 , HOH A:1049 , HOH A:1138 , HOH A:1139 , HOH A:1140
BINDING SITE FOR RESIDUE GDP A 900
07
AC7
SOFTWARE
ARG A:32 , GLU A:33 , ARG A:36 , GLU A:53 , HOH A:982 , HOH A:1105 , HOH A:1125
BINDING SITE FOR RESIDUE EDO A 970
08
AC8
SOFTWARE
ASP A:42 , THR A:222 , GLN A:224 , GLU A:225
BINDING SITE FOR RESIDUE EDO A 971
09
AC9
SOFTWARE
ALA A:176 , ARG A:181 , HOH A:996
BINDING SITE FOR RESIDUE EDO A 972
10
BC1
SOFTWARE
LYS A:62 , ARG A:128 , ARG A:181
BINDING SITE FOR RESIDUE ACY A 950
11
BC2
SOFTWARE
LYS A:28 , LEU A:31 , ARG A:35 , ARG A:56
BINDING SITE FOR RESIDUE ACY A 951
12
BC3
SOFTWARE
GLU A:46 , HIS A:261 , CD A:752
BINDING SITE FOR RESIDUE ACY A 952
13
BC4
SOFTWARE
ARG A:98 , LEU A:100 , ARG A:169 , VAL A:172 , LEU A:209
BINDING SITE FOR RESIDUE ACY A 953
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SRP54 (A:266-279)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_THEAQ
266-279
1
A:266-279
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ng1a1 (A:1-88)
2a: SCOP_d1ng1a2 (A:89-294)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Domain of the SRP/SRP receptor G-proteins
(34)
Family
:
Domain of the SRP/SRP receptor G-proteins
(29)
Protein domain
:
Signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
1a
d1ng1a1
A:1-88
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
GTPase domain of the signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
2a
d1ng1a2
A:89-294
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ng1A02 (A:91-281)
2a: CATH_1ng1A01 (A:2-90)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus aquaticus. Organism_taxid: 271.
(3)
1a
1ng1A02
A:91-281
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.140, no name defined]
(15)
Thermus aquaticus. Organism_taxid: 271.
(3)
2a
1ng1A01
A:2-90
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_SRP54_1ng1A01 (A:98-293)
2a: PFAM_SRP54_N_1ng1A02 (A:5-82)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
SRP54
(20)
Thermus aquaticus
(12)
1a
SRP54-1ng1A01
A:98-293
Clan
:
no clan defined [family: SRP54_N]
(20)
Family
:
SRP54_N
(20)
Thermus aquaticus
(12)
2a
SRP54_N-1ng1A02
A:5-82
[
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]
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Chain A
Asymmetric Unit 1
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