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1NFB
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (240 KB)
Biol.Unit 2 (240 KB)
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(1)
Title
:
TERNARY COMPLEX OF THE HUMAN TYPE II INOSINE MONOPHOSPHATE DEDHYDROGENASE WITH 6CL-IMP AND NAD
Authors
:
D. Risal, M. D. Strickler, B. M. Goldstein
Date
:
13 Dec 02 (Deposition) - 27 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Keywords
:
8 Stranded Paralle Alpha/Beta Barrel, Dehydrogenase, Impd, Impdh, Guanine Nucleotide Biosynthesis Nad, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. Risal, M. D. Strickler, B. M. Goldstein
The Conformation Of Nad Bound To Human Inosine Monophosphat Dehydrogenase Type Ii
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 6-CHLOROPURINE RIBOSIDE, 5'-MONOPH... (CPRa)
1b: 6-CHLOROPURINE RIBOSIDE, 5'-MONOPH... (CPRb)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CPR
2
Ligand/Ion
6-CHLOROPURINE RIBOSIDE, 5'-MONOPHOSPHATE
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:68 , MET A:70 , GLY A:328 , SER A:329 , ILE A:330 , CYS A:331 , GLU A:335 , ASP A:364 , GLY A:365 , GLY A:366 , GLY A:387 , SER A:388 , TYR A:411 , NAD A:701 , HOH A:744
BINDING SITE FOR RESIDUE CPR A 631
2
AC2
SOFTWARE
SER B:68 , MET B:70 , GLY B:328 , SER B:329 , ILE B:330 , CYS B:331 , GLU B:335 , ASP B:364 , GLY B:365 , GLY B:366 , GLY B:387 , SER B:388 , TYR B:411 , NAD B:702 , HOH B:720
BINDING SITE FOR RESIDUE CPR B 631
3
AC3
SOFTWARE
THR A:45 , THR A:252 , HIS A:253 , ASP A:274 , SER A:275 , SER A:276 , PHE A:282 , ASN A:303 , ARG A:322 , HIS A:466 , GLN A:469 , CPR A:631 , HOH A:727 , HOH A:731 , HOH A:733 , HOH A:734
BINDING SITE FOR RESIDUE NAD A 701
4
AC4
SOFTWARE
THR B:45 , THR B:252 , HIS B:253 , ASP B:274 , SER B:275 , SER B:276 , PHE B:282 , ASN B:303 , ARG B:322 , HIS B:466 , GLN B:469 , CPR B:631 , HOH B:731 , HOH B:733 , HOH B:734 , HOH B:744 , HOH B:745
BINDING SITE FOR RESIDUE NAD B 702
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_070542 (L263F, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070542
L
263
F
IMDH2_HUMAN
Polymorphism
121434586
A/B
L
263
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: CBS (A:114-152,B:114-152|A:188-237,B:18...)
2: IMP_DH_GMP_RED (A:321-333,B:321-333)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBS
PS51371
CBS domain profile.
IMDH2_HUMAN
114-173
179-237
4
A:114-152
B:114-152
A:188-237
B:188-237
2
IMP_DH_GMP_RED
PS00487
IMP dehydrogenase / GMP reductase signature.
IMDH2_HUMAN
321-333
2
A:321-333
B:321-333
[
close PROSITE info
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Exons
(13, 26)
Info
All Exons
Exon 1.1c (A:10-33 | B:10-33)
Exon 1.2a (A:33-49 | B:33-49)
Exon 1.2c (A:50-83 | B:50-83)
Exon 1.3a (A:84-108 | B:84-108)
Exon 1.3g (A:109-152 (gaps) | B:109-152 (gaps...)
Exon 1.4a (A:188-207 | B:188-207)
Exon 1.4c (A:207-273 (gaps) | B:207-273 (gaps...)
Exon 1.5b (A:274-304 | B:274-304)
Exon 1.6 (A:304-336 | B:304-336)
Exon 1.8b (A:336-384 | B:336-384)
Exon 1.9a (A:384-414 | B:384-414)
Exon 1.9e (A:449-480 | B:449-480)
Exon 1.9h (A:480-498 | B:480-498)
View:
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All Exon Boundaries
01: Boundary -/1.1c
02: Boundary 1.1c/1.2a
03: Boundary 1.2a/1.2c
04: Boundary 1.2c/1.3a
05: Boundary 1.3a/1.3g
06: Boundary 1.3g/1.4a
07: Boundary 1.4a/1.4c
08: Boundary 1.4c/1.5b
09: Boundary 1.5b/1.6
10: Boundary 1.6/1.8b
11: Boundary 1.8b/1.9a
12: Boundary 1.9a/1.9e
13: Boundary 1.9e/1.9h
14: Boundary 1.9h/1.9k
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000326739
1c
ENSE00001923105
chr3:
49066823-49066686
138
IMDH2_HUMAN
1-33
33
2
A:10-33
B:10-33
24
24
1.2a
ENST00000326739
2a
ENSE00001269277
chr3:
49066239-49066191
49
IMDH2_HUMAN
33-49
17
2
A:33-49
B:33-49
17
17
1.2c
ENST00000326739
2c
ENSE00001269267
chr3:
49065965-49065864
102
IMDH2_HUMAN
50-83
34
2
A:50-83
B:50-83
34
34
1.3a
ENST00000326739
3a
ENSE00001269259
chr3:
49065755-49065681
75
IMDH2_HUMAN
84-108
25
2
A:84-108
B:84-108
25
25
1.3g
ENST00000326739
3g
ENSE00001269252
chr3:
49065349-49065143
207
IMDH2_HUMAN
109-177
69
2
A:109-152 (gaps)
B:109-152 (gaps)
44
44
1.4a
ENST00000326739
4a
ENSE00001269242
chr3:
49064480-49064393
88
IMDH2_HUMAN
178-207
30
2
A:188-207
B:188-207
20
20
1.4c
ENST00000326739
4c
ENSE00001269233
chr3:
49064319-49064120
200
IMDH2_HUMAN
207-273
67
2
A:207-273 (gaps)
B:207-273 (gaps)
67
67
1.5b
ENST00000326739
5b
ENSE00001269229
chr3:
49064042-49063952
91
IMDH2_HUMAN
274-304
31
2
A:274-304
B:274-304
31
31
1.6
ENST00000326739
6
ENSE00001671432
chr3:
49063852-49063757
96
IMDH2_HUMAN
304-336
33
2
A:304-336
B:304-336
33
33
1.8b
ENST00000326739
8b
ENSE00001269218
chr3:
49062702-49062559
144
IMDH2_HUMAN
336-384
49
2
A:336-384
B:336-384
49
49
1.9a
ENST00000326739
9a
ENSE00001269212
chr3:
49062473-49062329
145
IMDH2_HUMAN
384-432
49
2
A:384-414
B:384-414
31
31
1.9e
ENST00000326739
9e
ENSE00001269205
chr3:
49062235-49062092
144
IMDH2_HUMAN
432-480
49
2
A:449-480
B:449-480
32
32
1.9h
ENST00000326739
9h
ENSE00001269198
chr3:
49062011-49061928
84
IMDH2_HUMAN
480-508
29
2
A:480-498
B:480-498
19
19
1.9k
ENST00000326739
9k
ENSE00001754493
chr3:
49061837-49061758
80
IMDH2_HUMAN
508-514
7
0
-
-
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1nfba4 (A:112-231)
1b: SCOP_d1nfbb4 (B:112-231)
2a: SCOP_d1nfba1 (A:10-111,A:232-498)
2b: SCOP_d1nfbb1 (B:10-111,B:232-498)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CBS-domain pair
(75)
Superfamily
:
CBS-domain pair
(75)
Family
:
CBS-domain pair
(50)
Protein domain
:
Type II inosine monophosphate dehydrogenase CBS domains
(6)
Human (Homo sapiens), type II [TaxId: 9606]
(3)
1a
d1nfba4
A:112-231
1b
d1nfbb4
B:112-231
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Inosine monophosphate dehydrogenase (IMPDH)
(29)
Family
:
Inosine monophosphate dehydrogenase (IMPDH)
(18)
Protein domain
:
Inosine monophosphate dehydrogenase (IMPDH)
(18)
Human (Homo sapiens), type II [TaxId: 9606]
(3)
2a
d1nfba1
A:10-111,A:232-498
2b
d1nfbb1
B:10-111,B:232-498
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1nfbA00 (A:10-498)
1b: CATH_1nfbB00 (B:10-498)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
1nfbA00
A:10-498
1b
1nfbB00
B:10-498
[
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_IMPDH_1nfbB01 (B:28-498)
1b: PFAM_IMPDH_1nfbB02 (B:28-498)
2a: PFAM_CBS_1nfbB03 (B:188-232)
2b: PFAM_CBS_1nfbB04 (B:188-232)
2c: PFAM_CBS_1nfbB05 (B:188-232)
2d: PFAM_CBS_1nfbB06 (B:188-232)
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(
)
Organisms
(
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)
Clan
:
TIM_barrel
(694)
Family
:
IMPDH
(16)
Homo sapiens (Human)
(3)
1a
IMPDH-1nfbB01
B:28-498
1b
IMPDH-1nfbB02
B:28-498
Clan
:
no clan defined [family: CBS]
(51)
Family
:
CBS
(51)
Homo sapiens (Human)
(7)
2a
CBS-1nfbB03
B:188-232
2b
CBS-1nfbB04
B:188-232
2c
CBS-1nfbB05
B:188-232
2d
CBS-1nfbB06
B:188-232
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