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1NEP
Asym. Unit
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Asym.Unit (28 KB)
Biol.Unit 1 (25 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE BOVINE NPC2 (NIEMANN-PICK C2) PROTEIN
Authors
:
N. Friedland, H. -L. Liou, P. Lobel, A. M. Stock
Date
:
11 Dec 02 (Deposition) - 28 Jan 03 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Npc2, Bnpc2, Niemann-Pick C2, Ldl, Cholesterol, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Friedland, H. -L. Liou, P. Lobel, A. M. Stock
Structure Of A Cholesterol-Binding Protein Deficient In Niemann-Pick Type C2 Disease
Proc. Natl. Acad. Sci. Usa V. 100 2512 2003
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:39 , THR A:41 , ASN A:89 , HOH A:238 , HOH A:288
BINDING SITE FOR RESIDUE NAG A 402
2
AC2
SOFTWARE
PRO A:24 , THR A:25 , LYS A:29 , GLU A:108 , GLU A:110 , HOH A:204 , HOH A:252 , HOH A:261 , HOH A:291
BINDING SITE FOR RESIDUE PO4 A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:1-11)
Exon 1.2 (A:11-47)
Exon 1.3 (A:47-104)
Exon 1.4 (A:105-130)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000029271
1
ENSBTAE00000239030
chr10:
88254745-88254625
121
NPC2_BOVIN
1-30
30
1
A:1-11
11
1.2
ENSBTAT00000029271
2
ENSBTAE00000239031
chr10:
88251066-88250959
108
NPC2_BOVIN
30-66
37
1
A:11-47
37
1.3
ENSBTAT00000029271
3
ENSBTAE00000239032
chr10:
88249421-88249249
173
NPC2_BOVIN
66-123
58
1
A:47-104
58
1.4
ENSBTAT00000029271
4
ENSBTAE00000239033
chr10:
88247010-88246163
848
NPC2_BOVIN
124-151
28
1
A:105-130
26
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1nepa_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
ML domain
(9)
Protein domain
:
Epididymal secretory protein E1 (Niemann-Pick C2 protein)
(2)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d1nepa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1nepA00 (A:1-130)
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Organisms
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)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.770, no name defined]
(9)
Cattle (Bos taurus)
(2)
1a
1nepA00
A:1-130
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_E1_DerP2_DerF2_1nepA01 (A:1-128)
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Clan
:
no clan defined [family: E1_DerP2_DerF2]
(8)
Family
:
E1_DerP2_DerF2
(8)
Bos taurus (Bovine)
(1)
1a
E1_DerP2_DerF2-1nepA01
A:1-128
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Chain A
Asymmetric Unit 1
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