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Theor. Model
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Theoretical Model (101 KB)
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(1)
Title
:
THEORETICAL MODEL OF HUMAN CCR5 WITH DISULFIDE BOND BETWEEN CYS20 AND CYS269
Authors
:
S. Q. Liu, X. F. Shi, Z. R. Sun
Date
:
09 Dec 02 (Deposition) - 30 Dec 02 (Release) - 30 Dec 02 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
A Bundle Of Seven Transmembrane Alpha Helices
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Q. Liu, X. F. Shi, Z. R. Sun
Characterize Dynamic Conformational Space Of Human Ccr5 Extracellular Domain By Molecular Modeling And Molecular Dynamics Simulation
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(36, 36)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_003481 (Y10D, chain A, )
02: VAR_024066 (I12L, chain A, )
03: VAR_024067 (C20S, chain A, )
04: VAR_011839 (A29S, chain A, )
05: VAR_003482 (R31H, chain A, )
06: VAR_003483 (P34L, chain A, )
07: VAR_024068 (I42F, chain A, )
08: VAR_011840 (L55Q, chain A, )
09: VAR_011841 (R60S, chain A, )
10: VAR_003484 (K62R, chain A, )
11: VAR_003485 (Y68H, chain A, )
12: VAR_024069 (A73V, chain A, )
13: VAR_003486 (D95N, chain A, )
14: VAR_003487 (G97E, chain A, )
15: VAR_003488 (L122P, chain A, )
16: VAR_003489 (F158S, chain A, )
17: VAR_003490 (Y176C, chain A, )
18: VAR_003491 (T177A, chain A, )
19: VAR_012481 (C178R, chain A, )
20: VAR_003492 (S185N, chain A, )
21: VAR_003493 (M210V, chain A, )
22: VAR_003494 (Y214C, chain A, )
23: VAR_024070 (S215L, chain A, )
24: VAR_011842 (R223Q, chain A, )
25: VAR_003495 (T239S, chain A, )
26: VAR_003496 (L246P, chain A, )
27: VAR_003497 (T288M, chain A, )
28: VAR_011843 (G301V, chain A, )
29: VAR_003498 (E302G, chain A, )
30: VAR_003499 (K303E, chain A, )
31: VAR_003500 (N306S, chain A, )
32: VAR_003501 (K322R, chain A, )
33: VAR_003502 (E333G, chain A, )
34: VAR_003503 (A335V, chain A, )
35: VAR_003504 (Y339F, chain A, )
36: VAR_003505 (E345G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_003481
Y
10
D
CCR5_HUMAN
Unclassified
---
A
Y
10
D
02
UniProt
VAR_024066
I
12
L
CCR5_HUMAN
Polymorphism
---
A
I
12
L
03
UniProt
VAR_024067
C
20
S
CCR5_HUMAN
Polymorphism
---
A
C
20
S
04
UniProt
VAR_011839
A
29
S
CCR5_HUMAN
Polymorphism
1800939
A
A
29
S
05
UniProt
VAR_003482
R
31
H
CCR5_HUMAN
Polymorphism
56340326
A
R
31
H
06
UniProt
VAR_003483
P
34
L
CCR5_HUMAN
Unclassified
---
A
P
34
L
07
UniProt
VAR_024068
I
42
F
CCR5_HUMAN
Polymorphism
---
A
I
42
F
08
UniProt
VAR_011840
L
55
Q
CCR5_HUMAN
Polymorphism
1799863
A
L
55
Q
09
UniProt
VAR_011841
R
60
S
CCR5_HUMAN
Polymorphism
1800940
A
R
60
S
10
UniProt
VAR_003484
K
62
R
CCR5_HUMAN
Unclassified
---
A
K
62
R
11
UniProt
VAR_003485
Y
68
H
CCR5_HUMAN
Unclassified
---
A
Y
68
H
12
UniProt
VAR_024069
A
73
V
CCR5_HUMAN
Polymorphism
56198941
A
A
73
V
13
UniProt
VAR_003486
D
95
N
CCR5_HUMAN
Unclassified
---
A
D
95
N
14
UniProt
VAR_003487
G
97
E
CCR5_HUMAN
Unclassified
---
A
G
97
E
15
UniProt
VAR_003488
L
122
P
CCR5_HUMAN
Unclassified
---
A
L
122
P
16
UniProt
VAR_003489
F
158
S
CCR5_HUMAN
Unclassified
---
A
F
158
S
17
UniProt
VAR_003490
Y
176
C
CCR5_HUMAN
Unclassified
---
A
Y
176
C
18
UniProt
VAR_003491
T
177
A
CCR5_HUMAN
Unclassified
---
A
T
177
A
19
UniProt
VAR_012481
C
178
R
CCR5_HUMAN
Polymorphism
199824195
A
C
178
R
20
UniProt
VAR_003492
S
185
N
CCR5_HUMAN
Unclassified
---
A
S
185
N
21
UniProt
VAR_003493
M
210
V
CCR5_HUMAN
Unclassified
---
A
M
210
V
22
UniProt
VAR_003494
Y
214
C
CCR5_HUMAN
Unclassified
---
A
Y
214
C
23
UniProt
VAR_024070
S
215
L
CCR5_HUMAN
Polymorphism
---
A
S
215
L
24
UniProt
VAR_011842
R
223
Q
CCR5_HUMAN
Polymorphism
1800452
A
R
223
Q
25
UniProt
VAR_003495
T
239
S
CCR5_HUMAN
Unclassified
---
A
T
239
S
26
UniProt
VAR_003496
L
246
P
CCR5_HUMAN
Unclassified
---
A
L
246
P
27
UniProt
VAR_003497
T
288
M
CCR5_HUMAN
Unclassified
---
A
T
288
M
28
UniProt
VAR_011843
G
301
V
CCR5_HUMAN
Polymorphism
1800943
A
G
301
V
29
UniProt
VAR_003498
E
302
G
CCR5_HUMAN
Unclassified
---
A
E
302
G
30
UniProt
VAR_003499
K
303
E
CCR5_HUMAN
Unclassified
---
A
K
303
E
31
UniProt
VAR_003500
N
306
S
CCR5_HUMAN
Unclassified
---
A
N
306
S
32
UniProt
VAR_003501
K
322
R
CCR5_HUMAN
Unclassified
---
A
K
322
R
33
UniProt
VAR_003502
E
333
G
CCR5_HUMAN
Unclassified
---
A
E
333
G
34
UniProt
VAR_003503
A
335
V
CCR5_HUMAN
Polymorphism
1800944
A
A
335
V
35
UniProt
VAR_003504
Y
339
F
CCR5_HUMAN
Polymorphism
1800945
A
Y
339
F
36
UniProt
VAR_003505
E
345
G
CCR5_HUMAN
Unclassified
---
A
E
345
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: G_PROTEIN_RECEP_F1_1 (A:114-130)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_PROTEIN_RECEP_F1_1
PS00237
G-protein coupled receptors family 1 signature.
CCR5_HUMAN
114-130
1
A:114-130
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.3c (A:1-352)
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All Exon Boundaries
1: Boundary 1.2b/1.3c
2: Boundary 1.3c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000292303
2b
ENSE00001078626
chr3:
46412345-46412479
135
CCR5_HUMAN
-
0
0
-
-
1.3c
ENST00000292303
3c
ENSE00001054508
chr3:
46414383-46417697
3315
CCR5_HUMAN
1-356
356
1
A:1-352
352
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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