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1NDR
Asym. Unit
Info
Asym.Unit (37 KB)
Biol.Unit 1 (10 KB)
Biol.Unit 2 (10 KB)
Biol.Unit 3 (10 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF A BLUE COPPER NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
Authors
:
F. E. Dodd, S. S. Hasnain, Z. H. L. Abraham, R. R. Eady, B. E. Smith
Date
:
23 Jan 97 (Deposition) - 07 Jul 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Blue Copper Nitrite Reductase, Copper Protein, Nitrite Reduction, Reductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. E. Dodd, S. S. Hasnain, Z. H. Abraham, R. R. Eady, B. E. Smith
Structures Of A Blue-Copper Nitrite Reductase And Its Substrate-Bound Complex.
Acta Crystallogr. , Sect. D V. 53 406 1997
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
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No.
Name
Count
Type
Full Name
1
CU
6
Ligand/Ion
COPPER (II) ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (UNKNOWN)
02: AC2 (UNKNOWN)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC1 (UNKNOWN)
10: BC2 (UNKNOWN)
11: CC1 (UNKNOWN)
12: CC2 (UNKNOWN)
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No.
Name
Evidence
Residues
Description
01
AC1
UNKNOWN
HIS A:95 , CYS A:136 , HIS A:145 , MET A:150
MONOMER A TYPE 1 COPPER SITE.
02
AC2
UNKNOWN
HIS A:100 , HIS A:135 , HIS A:306 , HOH A:503
MONOMER A TYPE 2 COPPER SITE.
03
AC3
SOFTWARE
HIS A:95 , CYS A:136 , HIS A:145 , MET A:150
BINDING SITE FOR RESIDUE CU A 501
04
AC4
SOFTWARE
HIS A:100 , HIS A:135 , HOH A:503 , HIS B:306
BINDING SITE FOR RESIDUE CU A 502
05
AC5
SOFTWARE
HIS B:95 , CYS B:136 , HIS B:145 , MET B:150
BINDING SITE FOR RESIDUE CU B 501
06
AC6
SOFTWARE
HIS B:100 , HIS B:135 , HOH B:503 , HIS C:306
BINDING SITE FOR RESIDUE CU B 502
07
AC7
SOFTWARE
HIS C:95 , CYS C:136 , HIS C:145 , MET C:150
BINDING SITE FOR RESIDUE CU C 501
08
AC8
SOFTWARE
HIS A:306 , HOH A:504 , HIS C:100 , HIS C:135
BINDING SITE FOR RESIDUE CU C 502
09
BC1
UNKNOWN
HIS B:95 , CYS B:136 , HIS B:145 , MET B:150
MONOMER B TYPE 1 COPPER SITE.
10
BC2
UNKNOWN
HIS B:100 , HIS B:135 , HIS B:306 , HOH B:503
MONOMER B TYPE 2 COPPER SITE.
11
CC1
UNKNOWN
HIS C:95 , CYS C:136 , HIS C:145 , MET C:150
MONOMER C TYPE 1 COPPER SITE.
12
CC2
UNKNOWN
HIS C:100 , HIS C:135 , HIS C:306 , HOH A:504
MONOMER C TYPE 2 COPPER SITE.
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1ndra1 (A:11-166)
1b: SCOP_d1ndra2 (A:167-340)
1c: SCOP_d1ndrb1 (B:11-166)
1d: SCOP_d1ndrb2 (B:167-340)
1e: SCOP_d1ndrc1 (C:11-166)
1f: SCOP_d1ndrc2 (C:167-340)
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Nitrite reductase, NIR
(79)
Alcaligenes xylosoxidans [TaxId: 85698]
(23)
1a
d1ndra1
A:11-166
1b
d1ndra2
A:167-340
1c
d1ndrb1
B:11-166
1d
d1ndrb2
B:167-340
1e
d1ndrc1
C:11-166
1f
d1ndrc2
C:167-340
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CATH Domains
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Asym.Unit (37 KB)
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