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1NDA
Biol. Unit 1
Info
Asym.Unit (306 KB)
Biol.Unit 1 (154 KB)
Biol.Unit 2 (153 KB)
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(1)
Title
:
THE STRUCTURE OF TRYPANOSOMA CRUZI TRYPANOTHIONE REDUCTASE IN THE OXIDIZED AND NADPH REDUCED STATE
Authors
:
C. B. Lantwin, W. Kabsch, E. F. Pai, I. Schlichting, R. L. Krauth-Siegel
Date
:
02 Jul 93 (Deposition) - 30 Sep 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. B. Lantwin, I. Schlichting, W. Kabsch, E. F. Pai, R. L. Krauth-Siegel
The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State.
Proteins V. 18 161 1994
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:11 , GLY A:13 , SER A:14 , GLY A:15 , ILE A:34 , ASP A:35 , SER A:46 , ALA A:47 , GLY A:50 , THR A:51 , CYS A:52 , VAL A:55 , CYS A:57 , LYS A:60 , TRP A:126 , GLY A:127 , ALA A:159 , SER A:160 , GLY A:161 , PHE A:198 , ARG A:287 , ARG A:290 , LEU A:294 , GLY A:325 , ASP A:326 , MET A:332 , LEU A:333 , THR A:334 , PRO A:335 , HIS B:460
BINDING SITE FOR RESIDUE FAD A 500
2
AC2
SOFTWARE
HIS A:460 , GLY B:11 , GLY B:13 , SER B:14 , GLY B:15 , ILE B:34 , ASP B:35 , SER B:46 , ALA B:47 , GLY B:50 , THR B:51 , CYS B:52 , VAL B:55 , CYS B:57 , LYS B:60 , TRP B:126 , GLY B:127 , ALA B:159 , SER B:160 , GLY B:161 , PHE B:198 , ARG B:287 , ARG B:290 , LEU B:294 , GLY B:325 , ASP B:326 , MET B:332 , LEU B:333 , THR B:334 , PRO B:335
BINDING SITE FOR RESIDUE FAD B 500
[
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_TYTR_TRYCR_001 (K94N, chain A/B, )
2: VAR_TYTR_TRYCR_002 (E139A, chain A/B, )
3: VAR_TYTR_TRYCR_003 (N155H, chain A/B, )
4: VAR_TYTR_TRYCR_004 (N352T, chain A/B, )
5: VAR_TYTR_TRYCR_005 (V440I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TYTR_TRYCR_001
*
K
95
N
TYTR_TRYCR
---
---
A/B
K
94
N
2
UniProt
VAR_TYTR_TRYCR_002
*
E
140
A
TYTR_TRYCR
---
---
A/B
E
139
A
3
UniProt
VAR_TYTR_TRYCR_003
*
N
156
H
TYTR_TRYCR
---
---
A/B
N
155
H
4
UniProt
VAR_TYTR_TRYCR_004
*
N
353
T
TYTR_TRYCR
---
---
A/B
N
352
T
5
UniProt
VAR_TYTR_TRYCR_005
*
V
441
I
TYTR_TRYCR
---
---
A/B
V
440
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:49-59,B:49-59)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
TYTR_TRYCR
50-60
2
A:49-59
B:49-59
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1ndaa3 (A:358-484)
1b: SCOP_d1ndab3 (B:358-484)
1c: SCOP_d1ndac3 (C:358-484)
1d: SCOP_d1ndad3 (D:358-484)
2a: SCOP_d1ndaa1 (A:4-169,A:287-357)
2b: SCOP_d1ndaa2 (A:170-286)
2c: SCOP_d1ndab1 (B:4-169,B:287-357)
2d: SCOP_d1ndab2 (B:170-286)
2e: SCOP_d1ndac1 (C:170-286)
2f: SCOP_d1ndac2 (C:4-169,C:287-357)
2g: SCOP_d1ndad1 (D:170-286)
2h: SCOP_d1ndad2 (D:4-169,D:287-357)
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)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Trypanothione reductase
(10)
Trypanosoma cruzi [TaxId: 5693]
(4)
1a
d1ndaa3
A:358-484
1b
d1ndab3
B:358-484
1c
d1ndac3
C:358-484
1d
d1ndad3
D:358-484
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Trypanothione reductase
(10)
Trypanosoma cruzi [TaxId: 5693]
(4)
2a
d1ndaa1
A:4-169,A:287-357
2b
d1ndaa2
A:170-286
2c
d1ndab1
B:4-169,B:287-357
2d
d1ndab2
B:170-286
2e
d1ndac1
C:170-286
2f
d1ndac2
C:4-169,C:287-357
2g
d1ndad1
D:170-286
2h
d1ndad2
D:4-169,D:287-357
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1ndaA03 (A:360-471)
1b: CATH_1ndaB03 (B:360-471)
1c: CATH_1ndaC03 (C:360-471)
1d: CATH_1ndaD03 (D:360-471)
2a: CATH_1ndaA01 (A:4-164,A:286-359)
2b: CATH_1ndaB01 (B:4-164,B:286-359)
2c: CATH_1ndaC01 (C:4-164,C:286-359)
2d: CATH_1ndaD01 (D:4-164,D:286-359)
2e: CATH_1ndaA02 (A:165-285)
2f: CATH_1ndaB02 (B:165-285)
2g: CATH_1ndaC02 (C:165-285)
2h: CATH_1ndaD02 (D:165-285)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Trypanosoma cruzi. Organism_taxid: 5693
(1)
1a
1ndaA03
A:360-471
1b
1ndaB03
B:360-471
1c
1ndaC03
C:360-471
1d
1ndaD03
D:360-471
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Trypanosoma cruzi. Organism_taxid: 5693
(1)
2a
1ndaA01
A:4-164,A:286-359
2b
1ndaB01
B:4-164,B:286-359
2c
1ndaC01
C:4-164,C:286-359
2d
1ndaD01
D:4-164,D:286-359
2e
1ndaA02
A:165-285
2f
1ndaB02
B:165-285
2g
1ndaC02
C:165-285
2h
1ndaD02
D:165-285
[
close CATH info
]
Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Pyr_redox_1ndaD01 (D:190-274)
1b: PFAM_Pyr_redox_1ndaD02 (D:190-274)
1c: PFAM_Pyr_redox_1ndaD03 (D:190-274)
1d: PFAM_Pyr_redox_1ndaD04 (D:190-274)
2a: PFAM_Pyr_redox_2_1ndaD05 (D:6-332)
2b: PFAM_Pyr_redox_2_1ndaD06 (D:6-332)
2c: PFAM_Pyr_redox_2_1ndaD07 (D:6-332)
2d: PFAM_Pyr_redox_2_1ndaD08 (D:6-332)
3a: PFAM_Pyr_redox_dim_1ndaD09 (D:361-471)
3b: PFAM_Pyr_redox_dim_1ndaD10 (D:361-471)
3c: PFAM_Pyr_redox_dim_1ndaD11 (D:361-471)
3d: PFAM_Pyr_redox_dim_1ndaD12 (D:361-471)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Trypanosoma cruzi
(2)
1a
Pyr_redox-1ndaD01
D:190-274
1b
Pyr_redox-1ndaD02
D:190-274
1c
Pyr_redox-1ndaD03
D:190-274
1d
Pyr_redox-1ndaD04
D:190-274
Family
:
Pyr_redox_2
(69)
Trypanosoma cruzi
(2)
2a
Pyr_redox_2-1ndaD05
D:6-332
2b
Pyr_redox_2-1ndaD06
D:6-332
2c
Pyr_redox_2-1ndaD07
D:6-332
2d
Pyr_redox_2-1ndaD08
D:6-332
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Trypanosoma cruzi
(2)
3a
Pyr_redox_dim-1ndaD09
D:361-471
3b
Pyr_redox_dim-1ndaD10
D:361-471
3c
Pyr_redox_dim-1ndaD11
D:361-471
3d
Pyr_redox_dim-1ndaD12
D:361-471
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