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1NCQ
Biol. Unit 1
Info
Asym.Unit (138 KB)
Biol.Unit 1, α-C (7.6 MB)
Biol.Unit 1 (7.6 MB)
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(1)
Title
:
THE STRUCTURE OF HRV14 WHEN COMPLEXED WITH PLECONARIL, AN ANTIVIRAL COMPOUND
Authors
:
Y. Zhang, A. A. Simpson, C. M. Bator, S. Chakravarty, D. C. Pevear, G. A. Skochko, T. M. Tull, G. Diana, M. G. Rossmann
Date
:
05 Dec 02 (Deposition) - 16 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (60x)
Keywords
:
Rhinovirus 14, Hrv, Pleconaril, Icosahedral Virus
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Y. Zhang, A. A. Simpson, R. M. Ledford, C. M. Bator, S. Chakravarty, G. A. Skochko, T. M. Demenczuk, A. Watanyar, D. C. Pevear, M. G. Rossmann
Structural And Virological Studies Of The Stages Of Virus Replication That Are Affected By Antirhinovirus Compounds
J. Virol. V. 78 11061 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 60)
Info
All Hetero Components
1a: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISO... (W11a)
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No.
Name
Count
Type
Full Name
1
W11
60
Ligand/Ion
3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:104 , TYR A:128 , ALA A:150 , TYR A:152 , PRO A:174 , SER A:175 , VAL A:176 , PHE A:186 , TYR A:197 , MET A:224 , ALA C:24
BINDING SITE FOR RESIDUE W11 A 7001
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1ncq_1 (D:,B:)
1b: SCOP_d1ncqa_ (A:)
1c: SCOP_d1ncqc_ (C:)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Rhinovirus coat proteins
(46)
Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
(30)
1a
d1ncq.1
D:,B:
1b
d1ncqa_
A:
1c
d1ncqc_
C:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ncqD00 (D:29-68)
2a: CATH_1ncqC00 (C:1-236)
2b: CATH_1ncqB00 (B:8-262)
2c: CATH_1ncqA00 (A:17-289)
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)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
Rhinovirus 14, subunit 4
(68)
Human rhinovirus 14. Organism_taxid: 12131. Cell_line: hela cells. Human rhinovirus 14. Organism_taxid: 12131. Cell_line: hela cells. Humanrhinovirus 14. Organism_taxid: 12131. Cell_line: hela cells.
(2)
1a
1ncqD00
D:29-68
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Human rhinovirus 14. Organism_taxid: 12131. Cell_line: hela cells. Human rhinovirus 14. Organism_taxid: 12131. Cell_line: hela cells. Humanrhinovirus 14. Organism_taxid: 12131. Cell_line: hela cells.
(2)
2a
1ncqC00
C:1-236
2b
1ncqB00
B:8-262
2c
1ncqA00
A:17-289
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_1ncqC01 (C:28-197)
1b: PFAM_Rhv_1ncqC02 (C:28-197)
1c: PFAM_Rhv_1ncqC03 (C:28-197)
2a: PFAM_Pico_P1A_1ncqD01 (D:29-68)
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Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Human rhinovirus 14 (HRV-14)
(20)
1a
Rhv-1ncqC01
C:28-197
1b
Rhv-1ncqC02
C:28-197
1c
Rhv-1ncqC03
C:28-197
Clan
:
no clan defined [family: Pico_P1A]
(41)
Family
:
Pico_P1A
(41)
Human rhinovirus 14 (HRV-14)
(20)
2a
Pico_P1A-1ncqD01
D:29-68
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Asym.Unit (138 KB)
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