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1NCF
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
A NEW PARADIGM FOR TUMOR NECROSIS FACTOR SIGNALLING
Authors
:
J. H. Naismith, S. R. Sprang
Date
:
12 Oct 94 (Deposition) - 07 Dec 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Binding Protein, Cytokine, Signalling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Naismith, T. Q. Devine, B. J. Brandhuber, S. R. Sprang
Crystallographic Evidence For Dimerization Of Unliganded Tumor Necrosis Factor Receptor.
J. Biol. Chem. V. 270 13303 1995
(for further references see the
PDB file header
)
[
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]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(14, 28)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_019329 (H22Q, chain A/B, )
02: VAR_013410 (C30R, chain A/B, )
03: VAR_019302 (C30S, chain A/B, )
04: VAR_019303 (C33G, chain A/B, )
05: VAR_013411 (C33Y, chain A/B, )
06: VAR_019330 (P46L, chain A/B, )
07: VAR_013412 (T50M, chain A/B, )
08: VAR_013413 (C52F, chain A/B, )
09: VAR_019304 (C70S, chain A/B, )
10: VAR_019331 (S86G, chain A/B, )
11: VAR_013414 (C88R, chain A/B, )
12: VAR_013415 (C88Y, chain A/B, )
13: VAR_019305 (R92P, chain A/B, )
14: VAR_019332 (R92Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019329
H
51
Q
TNR1A_HUMAN
Disease (FHF)
---
A/B
H
22
Q
02
UniProt
VAR_013410
C
59
R
TNR1A_HUMAN
Disease (FHF)
---
A/B
C
30
R
03
UniProt
VAR_019302
C
59
S
TNR1A_HUMAN
Disease (FHF)
---
A/B
C
30
S
04
UniProt
VAR_019303
C
62
G
TNR1A_HUMAN
Disease (FHF)
---
A/B
C
33
G
05
UniProt
VAR_013411
C
62
Y
TNR1A_HUMAN
Disease (FHF)
---
A/B
C
33
Y
06
UniProt
VAR_019330
P
75
L
TNR1A_HUMAN
Disease (FHF)
4149637
A/B
P
46
L
07
UniProt
VAR_013412
T
79
M
TNR1A_HUMAN
Disease (FHF)
---
A/B
T
50
M
08
UniProt
VAR_013413
C
81
F
TNR1A_HUMAN
Disease (FHF)
---
A/B
C
52
F
09
UniProt
VAR_019304
C
99
S
TNR1A_HUMAN
Disease (FHF)
---
A/B
C
70
S
10
UniProt
VAR_019331
S
115
G
TNR1A_HUMAN
Disease (FHF)
---
A/B
S
86
G
11
UniProt
VAR_013414
C
117
R
TNR1A_HUMAN
Disease (FHF)
---
A/B
C
88
R
12
UniProt
VAR_013415
C
117
Y
TNR1A_HUMAN
Disease (FHF)
---
A/B
C
88
Y
13
UniProt
VAR_019305
R
121
P
TNR1A_HUMAN
Disease (FHF)
4149584
A/B
R
92
P
14
UniProt
VAR_019332
R
121
Q
TNR1A_HUMAN
Disease (FHF)
4149584
A/B
R
92
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: TNFR_NGFR_2 (A:14-52,B:14-52|A:54-96,B:54-96|A:...)
2: TNFR_NGFR_1 (A:15-52,B:15-52|A:55-96,B:55-96|A:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNFR_NGFR_2
PS50050
TNFR/NGFR family cysteine-rich region domain profile.
TNR1A_HUMAN
43-81
83-125
126-166
6
A:14-52
B:14-52
A:54-96
B:54-96
A:97-137
B:97-137
2
TNFR_NGFR_1
PS00652
TNFR/NGFR family cysteine-rich region signature.
TNR1A_HUMAN
44-81
84-125
125-166
6
A:15-52
B:15-52
A:55-96
B:55-96
A:96-137
B:96-137
[
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Exons
(5, 9)
Info
All Exons
Exon 1.2 (A:11-36 | B:14-36)
Exon 1.3 (A:36-79 | B:36-79)
Exon 1.4 (A:79-129 | B:79-129)
Exon 1.5 (A:129-150 | B:129-155)
Exon 1.7 (- | B:155-155)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.7
6: Boundary 1.7/1.8
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000162749
1
ENSE00001044275
chr12:
6451261-6450942
320
TNR1A_HUMAN
1-13
13
0
-
-
1.2
ENST00000162749
2
ENSE00000714951
chr12:
6443410-6443257
154
TNR1A_HUMAN
14-65
52
2
A:11-36
B:14-36
26
23
1.3
ENST00000162749
3
ENSE00000714950
chr12:
6443031-6442903
129
TNR1A_HUMAN
65-108
44
2
A:36-79
B:36-79
44
44
1.4
ENST00000162749
4
ENSE00000714949
chr12:
6442682-6442533
150
TNR1A_HUMAN
108-158
51
2
A:79-129
B:79-129
51
51
1.5
ENST00000162749
5
ENSE00000714948
chr12:
6442313-6442235
79
TNR1A_HUMAN
158-184
27
2
A:129-150
B:129-155
22
27
1.7
ENST00000162749
7
ENSE00000714947
chr12:
6440092-6440019
74
TNR1A_HUMAN
184-209
26
1
-
B:155-155
-
1
1.8
ENST00000162749
8
ENSE00000714946
chr12:
6439877-6439764
114
TNR1A_HUMAN
209-247
39
0
-
-
1.9
ENST00000162749
9
ENSE00000714944
chr12:
6439461-6439433
29
TNR1A_HUMAN
247-256
10
0
-
-
1.10
ENST00000162749
10
ENSE00000714943
chr12:
6439232-6438944
289
TNR1A_HUMAN
257-353
97
0
-
-
1.11
ENST00000162749
11
ENSE00000866894
chr12:
6438788-6437924
865
TNR1A_HUMAN
353-455
103
0
-
-
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1ncfa1 (A:11-71)
1b: SCOP_d1ncfb2 (B:72-115)
1c: SCOP_d1ncfb3 (B:116-155)
1d: SCOP_d1ncfa2 (A:72-115)
1e: SCOP_d1ncfa3 (A:116-150)
1f: SCOP_d1ncfb1 (B:14-71)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
TNF receptor-like
(25)
Superfamily
:
TNF receptor-like
(25)
Family
:
TNF receptor-like
(16)
Protein domain
:
Tumor necrosis factor (TNF) receptor
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1ncfa1
A:11-71
1b
d1ncfb2
B:72-115
1c
d1ncfb3
B:116-155
1d
d1ncfa2
A:72-115
1e
d1ncfa3
A:116-150
1f
d1ncfb1
B:14-71
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ncfA02 (A:98-150)
1b: CATH_1ncfB01 (B:14-97)
1c: CATH_1ncfA01 (A:11-97)
1d: CATH_1ncfB02 (B:98-150)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Tumor Necrosis Factor Receptor, subunit A; domain 2
(17)
Homologous Superfamily
:
Tumor Necrosis Factor Receptor, subunit A, domain 2
(16)
Human (Homo sapiens)
(13)
1a
1ncfA02
A:98-150
1b
1ncfB01
B:14-97
1c
1ncfA01
A:11-97
1d
1ncfB02
B:98-150
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_TNFR_c6_1ncfB01 (B:98-137)
1b: PFAM_TNFR_c6_1ncfB02 (B:98-137)
1c: PFAM_TNFR_c6_1ncfB03 (B:98-137)
1d: PFAM_TNFR_c6_1ncfB04 (B:98-137)
1e: PFAM_TNFR_c6_1ncfB05 (B:98-137)
1f: PFAM_TNFR_c6_1ncfB06 (B:98-137)
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: TNFR_c6]
(13)
Family
:
TNFR_c6
(13)
Homo sapiens (Human)
(8)
1a
TNFR_c6-1ncfB01
B:98-137
1b
TNFR_c6-1ncfB02
B:98-137
1c
TNFR_c6-1ncfB03
B:98-137
1d
TNFR_c6-1ncfB04
B:98-137
1e
TNFR_c6-1ncfB05
B:98-137
1f
TNFR_c6-1ncfB06
B:98-137
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Asymmetric Unit 1
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