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1NC8
Asym. Unit
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Asym.Unit (122 KB)
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Models
(15 )
Title
:
HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE MINIMAL ACTIVE DOMAIN OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN, 15 STRUCTURES
Authors
:
Y. Kodera, K. Sato, T. Tsukahara, H. Komatsu, T. Maeda, T. Kohno
Date
:
14 May 98 (Deposition) - 25 May 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (15 x)
Keywords
:
Nucleocapsid Protein, Hiv-2, Rna Recognition, Zinc Finger, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kodera, K. Sato, T. Tsukahara, H. Komatsu, T. Maeda, T. Kohno
High-Resolution Solution Nmr Structure Of The Minimal Active Domain Of The Human Immunodeficiency Virus Type-2 Nucleocapsid Protein.
Biochemistry V. 37 17704 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
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1a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: ZNB (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:9 , CYS A:12 , LYS A:14 , HIS A:17 , CYS A:22
BINDING SITE FOR RESIDUE ZN A 30
2
ZNB
UNKNOWN
CYS A:9 , TRP A:10 , ASN A:11 , CYS A:12 , GLY A:13 , LYS A:14 , GLU A:15 , GLY A:16 , HIS A:17 , SER A:18 , ALA A:19 , ARG A:20 , GLN A:21 , CYS A:22
CCHC ZINC FINGER.
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PROSITE Patterns/Profiles
(1, 1)
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1: ZF_CCHC (A:8-23|-,A:8-23|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_CCHC
PS50158
Zinc finger CCHC-type profile.
GAG_HV2G1
391-406
413-428
1
A:8-23
-
POL_HV2G1
391-406
413-428
1
A:8-23
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1nc8a_ (A:)
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Class
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Small proteins
(3458)
Fold
:
Retrovirus zinc finger-like domains
(26)
Superfamily
:
Retrovirus zinc finger-like domains
(26)
Family
:
Retrovirus zinc finger-like domains
(26)
Protein domain
:
HIV nucleocapsid
(13)
Human immunodeficiency virus type 2 [TaxId: 11709]
(1)
1a
d1nc8a_
A:
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CATH Domains
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Pfam Domains
(1, 1)
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1a: PFAM_zf_CCHC_1nc8A01 (A:7-24)
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Clan
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Retroviral_zf
(10)
Family
:
zf-CCHC
(10)
Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2)
(1)
1a
zf-CCHC-1nc8A01
A:7-24
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