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1NBU
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
7,8-DIHYDRONEOPTERIN ALDOLASE COMPLEXED WITH PRODUCT FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
C. W. Goulding, M. I. Apostol, M. R. Sawaya, M. Phillips, A. Parseghian, D. Eisenberg, Tb Structural Genomics Consortium (Tbsgc)
Date
:
03 Dec 02 (Deposition) - 13 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Anti-Parallel, Beta-Sheet, Two Alpha Helices, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. W. Goulding, M. I. Apostol, M. R. Sawaya, M. Phillips, A. Parseghian, D. Eisenberg
Regulation By Oligomerization In A Mycobacterial Folate Biosynthetic Enzyme.
J. Mol. Biol. V. 349 61 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDR... (PH2a)
1b: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDR... (PH2b)
1c: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDR... (PH2c)
1d: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDR... (PH2d)
1e: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDR... (PH2e)
1f: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDR... (PH2f)
1g: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDR... (PH2g)
1h: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDR... (PH2h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PH2
8
Ligand/Ion
2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:51 , TYR A:52 , ASP A:53 , TYR A:54 , VAL A:55 , GLY C:17 , VAL C:18 , GLU C:22 , LEU C:72 , ILE C:73 , GLU C:74 , LYS C:99 , HOH C:9166
BINDING SITE FOR RESIDUE PH2 C 120
2
AC2
SOFTWARE
LEU B:48 , THR B:51 , TYR B:52 , ASP B:53 , TYR B:54 , VAL B:55 , GLY D:17 , VAL D:18 , GLU D:22 , LEU D:72 , ILE D:73 , GLU D:74 , LYS D:99 , HOH D:9116
BINDING SITE FOR RESIDUE PH2 D 220
3
AC3
SOFTWARE
GLY B:17 , VAL B:18 , GLU B:22 , LEU B:72 , ILE B:73 , GLU B:74 , LYS B:99 , HOH B:9023 , THR C:51 , TYR C:52 , ASP C:53 , TYR C:54 , VAL C:55
BINDING SITE FOR RESIDUE PH2 B 320
4
AC4
SOFTWARE
GLY A:17 , VAL A:18 , GLU A:22 , LEU A:72 , ILE A:73 , GLU A:74 , LYS A:99 , HOH A:9140 , LEU D:48 , THR D:51 , TYR D:52 , ASP D:53 , TYR D:54 , VAL D:55
BINDING SITE FOR RESIDUE PH2 A 420
5
AC5
SOFTWARE
LEU E:48 , THR E:51 , TYR E:52 , ASP E:53 , TYR E:54 , VAL E:55 , GLY G:17 , VAL G:18 , GLU G:22 , LEU G:72 , ILE G:73 , GLU G:74 , LYS G:99 , HOH G:9047
BINDING SITE FOR RESIDUE PH2 G 520
6
AC6
SOFTWARE
LEU F:48 , THR F:51 , TYR F:52 , ASP F:53 , TYR F:54 , VAL F:55 , HOH F:9340 , GLY H:17 , VAL H:18 , GLU H:22 , LEU H:72 , ILE H:73 , GLU H:74 , LYS H:99 , HOH H:9005
BINDING SITE FOR RESIDUE PH2 H 620
7
AC7
SOFTWARE
GLY F:17 , VAL F:18 , GLU F:22 , LEU F:72 , ILE F:73 , GLU F:74 , LYS F:99 , HOH F:9017 , LEU G:48 , THR G:51 , TYR G:52 , ASP G:53 , TYR G:54 , VAL G:55
BINDING SITE FOR RESIDUE PH2 F 720
8
AC8
SOFTWARE
GLY E:17 , VAL E:18 , GLU E:22 , LEU E:72 , ILE E:73 , GLU E:74 , LYS E:99 , HOH E:9003 , LEU H:48 , THR H:51 , TYR H:52 , ASP H:53 , TYR H:54 , VAL H:55
BINDING SITE FOR RESIDUE PH2 E 820
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1nbua_ (A:)
1b: SCOP_d1nbub_ (B:)
1c: SCOP_d1nbuc_ (C:)
1d: SCOP_d1nbud_ (D:)
1e: SCOP_d1nbue_ (E:)
1f: SCOP_d1nbuf_ (F:)
1g: SCOP_d1nbug_ (G:)
1h: SCOP_d1nbuh_ (H:)
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Classes
(
)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
DHN aldolase/epimerase
(16)
Protein domain
:
7,8-dihydroneopterin aldolase
(15)
Mycobacterium tuberculosis [TaxId: 1773]
(2)
1a
d1nbua_
A:
1b
d1nbub_
B:
1c
d1nbuc_
C:
1d
d1nbud_
D:
1e
d1nbue_
E:
1f
d1nbuf_
F:
1g
d1nbug_
G:
1h
d1nbuh_
H:
[
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]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1nbuA00 (A:2-119)
1b: CATH_1nbuE00 (E:2-119)
1c: CATH_1nbuF00 (F:2-119)
1d: CATH_1nbuG00 (G:2-119)
1e: CATH_1nbuH00 (H:2-119)
1f: CATH_1nbuB00 (B:2-119)
1g: CATH_1nbuD00 (D:2-119)
1h: CATH_1nbuC00 (C:2-119)
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GTP Cyclohydrolase I, domain 2
(31)
Homologous Superfamily
:
[code=3.30.1130.10, no name defined]
(31)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(1)
1a
1nbuA00
A:2-119
1b
1nbuE00
E:2-119
1c
1nbuF00
F:2-119
1d
1nbuG00
G:2-119
1e
1nbuH00
H:2-119
1f
1nbuB00
B:2-119
1g
1nbuD00
D:2-119
1h
1nbuC00
C:2-119
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_FolB_1nbuH01 (H:5-117)
1b: PFAM_FolB_1nbuH02 (H:5-117)
1c: PFAM_FolB_1nbuH03 (H:5-117)
1d: PFAM_FolB_1nbuH04 (H:5-117)
1e: PFAM_FolB_1nbuH05 (H:5-117)
1f: PFAM_FolB_1nbuH06 (H:5-117)
1g: PFAM_FolB_1nbuH07 (H:5-117)
1h: PFAM_FolB_1nbuH08 (H:5-117)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
THBO-biosyn
(64)
Family
:
FolB
(15)
Mycobacterium tuberculosis
(1)
1a
FolB-1nbuH01
H:5-117
1b
FolB-1nbuH02
H:5-117
1c
FolB-1nbuH03
H:5-117
1d
FolB-1nbuH04
H:5-117
1e
FolB-1nbuH05
H:5-117
1f
FolB-1nbuH06
H:5-117
1g
FolB-1nbuH07
H:5-117
1h
FolB-1nbuH08
H:5-117
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Asymmetric Unit 1
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