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Asym. Unit
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Asym.Unit (33 KB)
Biol.Unit 1 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RIBOFLAVIN KINASE
Authors
:
S. Karthikeyan, Q. Zhou, F. Mseeh, N. V. Grishin, A. L. Osterman, H. Zhan
Date
:
01 Dec 02 (Deposition) - 11 Mar 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Barrel, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Karthikeyan, Q. Zhou, F. Mseeh, N. V. Grishin, A. L. Osterman, H. Zhang
Crystal Structure Of Human Riboflavin Kinase Reveals A Beta Barrel Fold And A Novel Active Site Arch
Structure V. 11 265 2003
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:34 , ADP A:301 , HOH A:402 , HOH A:408
BINDING SITE FOR RESIDUE MG A 201
2
AC2
SOFTWARE
VAL A:19 , GLY A:22 , GLY A:26 , SER A:27 , LYS A:28 , PRO A:33 , THR A:34 , ASN A:36 , THR A:87 , ILE A:89 , HIS A:91 , PHE A:93 , ASP A:96 , PHE A:97 , TYR A:98 , MG A:201 , HOH A:401 , HOH A:402 , HOH A:406 , HOH A:408 , HOH A:422 , HOH A:426 , HOH A:452
BINDING SITE FOR RESIDUE ADP A 301
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(4, 4)
Info
All Exons
Exon 1.1b (A:9-35)
Exon 1.4 (A:35-85)
Exon 1.5a (A:86-120)
Exon 1.6e (A:120-155)
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1: Boundary -/1.1b
2: Boundary 1.1b/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.6e
5: Boundary 1.6e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000376736
1b
ENSE00001471519
chr9:
79009421-79009006
416
RIFK_HUMAN
1-28
28
1
A:9-35
27
1.4
ENST00000376736
4
ENSE00002160773
chr9:
79007485-79007334
152
RIFK_HUMAN
28-78
51
1
A:35-85
51
1.5a
ENST00000376736
5a
ENSE00002176811
chr9:
79003572-79003470
103
RIFK_HUMAN
79-113
35
1
A:86-120
35
1.6e
ENST00000376736
6e
ENSE00001471508
chr9:
79002445-79000433
2013
RIFK_HUMAN
113-155
43
1
A:120-155
36
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1nb0a_ (A:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin kinase-like
(23)
Family
:
ATP-dependent riboflavin kinase-like
(14)
Protein domain
:
Riboflavin kinase
(8)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1nb0a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1nb0A00 (A:9-155)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Riboflavin kinase-like
(22)
Human (Homo sapiens)
(4)
1a
1nb0A00
A:9-155
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Flavokinase_1nb0A01 (A:9-138)
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Clans
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(
)
Clan
:
no clan defined [family: Flavokinase]
(12)
Family
:
Flavokinase
(12)
Homo sapiens (Human)
(4)
1a
Flavokinase-1nb0A01
A:9-138
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Chain A
Asymmetric Unit 1
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