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1NAX
Biol. Unit 1
Info
Asym.Unit (46 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
THYROID RECEPTOR BETA1 IN COMPLEX WITH A BETA-SELECTIVE LIGAND
Authors
:
L. Ye, Y. L. Li, K. Mellstrom, C. Mellin, L. G. Bladh, K. Koehler, N. Garg, A. M. Garcia Collazo, C. Litten, B. Husman, K. Persson, J. Ljunggren, P. G. Sleph, R. George, J. Malm
Date
:
29 Nov 02 (Deposition) - 17 Jun 03 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Nuclear Receptor, Thyroid Receptor, Complex, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Ye, Y. L. Li, K. Mellstrom, C. Mellin, L. G. Bladh, K. Koehler, N. Garg A. M. Garcia Collazo, C. Litten, B. Husman, K. Persson, J. Ljunggren, G. Grover, P. G. Sleph, R. George, J. Malm
Thyroid Receptor Ligands. 1. Agonist Ligands Selective For The Thyroid Receptor Beta1.
J. Med. Chem. V. 46 1580 2003
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: {3,5-DICHLORO-4-[4-HYDROXY-3-(PROP... (IH5a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IH5
1
Ligand/Ion
{3,5-DICHLORO-4-[4-HYDROXY-3-(PROPAN-2-YL)PHENOXY]PHENYL}ACETIC ACID
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:275 , ILE A:276 , ALA A:279 , ARG A:282 , MET A:313 , LEU A:330 , ASN A:331 , GLY A:344 , LEU A:346 , ILE A:353 , HIS A:435 , MET A:442 , PHE A:455 , HOH A:606 , HOH A:607
BINDING SITE FOR RESIDUE IH5 A 501
[
close Site info
]
SAPs(SNPs)/Variants
(35, 35)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_050577 (D216G, chain A, )
02: VAR_004632 (A234T, chain A, )
03: VAR_004633 (R243W, chain A, )
04: VAR_059041 (A268G, chain A, )
05: VAR_004634 (R316H, chain A, )
06: VAR_004635 (A317T, chain A, )
07: VAR_004636 (R320C, chain A, )
08: VAR_004637 (R320H, chain A, )
09: VAR_059042 (N331D, chain A, )
10: VAR_004638 (G332R, chain A, )
11: VAR_059043 (A335P, chain A, )
12: VAR_011784 (T337I, chain A, )
13: VAR_004640 (R338W, chain A, )
14: VAR_004641 (Q340H, chain A, )
15: VAR_059044 (L341P, chain A, )
16: VAR_004642 (K342I, chain A, )
17: VAR_004645 (G345R, chain A, )
18: VAR_004644 (G345S, chain A, )
19: VAR_004643 (G345V, chain A, )
20: VAR_059045 (L346F, chain A, )
21: VAR_004646 (G347E, chain A, )
22: VAR_004647 (V348E, chain A, )
23: VAR_004648 (T426I, chain A, )
24: VAR_058508 (R429Q, chain A, )
25: VAR_059046 (I431M, chain A, )
26: VAR_004649 (R438H, chain A, )
27: VAR_004650 (M442V, chain A, )
28: VAR_004651 (K443E, chain A, )
29: VAR_004652 (C446R, chain A, )
30: VAR_059047 (P447T, chain A, )
31: VAR_004653 (P453H, chain A, )
32: VAR_059048 (P453L, chain A, )
33: VAR_004654 (P453S, chain A, )
34: VAR_004655 (P453T, chain A, )
35: VAR_059049 (F459C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_050577
D
216
G
THB_HUMAN
Polymorphism
9865746
A
D
216
G
02
UniProt
VAR_004632
A
234
T
THB_HUMAN
Disease (GTHR)
---
A
A
234
T
03
UniProt
VAR_004633
R
243
W
THB_HUMAN
Disease (GTHR)
---
A
R
243
W
04
UniProt
VAR_059041
A
268
G
THB_HUMAN
Disease (GTHR)
---
A
A
268
G
05
UniProt
VAR_004634
R
316
H
THB_HUMAN
Disease (PRTH)
---
A
R
316
H
06
UniProt
VAR_004635
A
317
T
THB_HUMAN
Disease (GTHR)
---
A
A
317
T
07
UniProt
VAR_004636
R
320
C
THB_HUMAN
Disease (GTHR)
---
A
R
320
C
08
UniProt
VAR_004637
R
320
H
THB_HUMAN
Disease (GTHR)
---
A
R
320
H
09
UniProt
VAR_059042
N
331
D
THB_HUMAN
Disease (GTHR)
---
A
N
331
D
10
UniProt
VAR_004638
G
332
R
THB_HUMAN
Disease (GTHR)
28999969
A
G
332
R
11
UniProt
VAR_059043
A
335
P
THB_HUMAN
Disease (GTHR)
---
A
A
335
P
12
UniProt
VAR_011784
T
337
I
THB_HUMAN
Polymorphism
1054624
A
T
337
I
13
UniProt
VAR_004640
R
338
W
THB_HUMAN
Disease (GTHR)
---
A
R
338
W
14
UniProt
VAR_004641
Q
340
H
THB_HUMAN
Disease (GTHR)
---
A
Q
340
H
15
UniProt
VAR_059044
L
341
P
THB_HUMAN
Disease (GTHR)
---
A
L
341
P
16
UniProt
VAR_004642
K
342
I
THB_HUMAN
Disease (GTHR)
---
A
K
342
I
17
UniProt
VAR_004645
G
345
R
THB_HUMAN
Disease (GTHR)
---
A
G
345
R
18
UniProt
VAR_004644
G
345
S
THB_HUMAN
Disease (GTHR)
---
A
G
345
S
19
UniProt
VAR_004643
G
345
V
THB_HUMAN
Disease (GTHR)
28999970
A
G
345
V
20
UniProt
VAR_059045
L
346
F
THB_HUMAN
Disease (GTHR)
---
A
L
346
F
21
UniProt
VAR_004646
G
347
E
THB_HUMAN
Disease (GTHR)
28999971
A
G
347
E
22
UniProt
VAR_004647
V
348
E
THB_HUMAN
Disease (GTHR)
---
A
V
348
E
23
UniProt
VAR_004648
T
426
I
THB_HUMAN
Disease (GTHR)
---
A
T
426
I
24
UniProt
VAR_058508
R
429
Q
THB_HUMAN
Disease (PRTH)
---
A
R
429
Q
25
UniProt
VAR_059046
I
431
M
THB_HUMAN
Disease (GTHR)
---
A
I
431
M
26
UniProt
VAR_004649
R
438
H
THB_HUMAN
Disease (GTHR)
---
A
R
438
H
27
UniProt
VAR_004650
M
442
V
THB_HUMAN
Disease (GTHR)
---
A
M
442
V
28
UniProt
VAR_004651
K
443
E
THB_HUMAN
Disease (GTHR)
---
A
K
443
E
29
UniProt
VAR_004652
C
446
R
THB_HUMAN
Disease (GTHR)
---
A
C
446
R
30
UniProt
VAR_059047
P
447
T
THB_HUMAN
Disease (GTHR)
---
A
P
447
T
31
UniProt
VAR_004653
P
453
H
THB_HUMAN
Disease (GTHR)
---
A
P
453
H
32
UniProt
VAR_059048
P
453
L
THB_HUMAN
Disease (GTHR)
---
A
P
453
L
33
UniProt
VAR_004654
P
453
S
THB_HUMAN
Disease (GTHR)
---
A
P
453
S
34
UniProt
VAR_004655
P
453
T
THB_HUMAN
Disease (GTHR)
28933408
A
P
453
T
35
UniProt
VAR_059049
F
459
C
THB_HUMAN
Disease (GTHR)
---
A
F
459
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1naxa_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Thyroid hormone receptor beta (TR-beta)
(15)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d1naxa_
A:
[
close SCOP info
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1naxA00 (A:211-460)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1naxA00
A:211-460
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1naxA01 (A:257-445)
View:
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Label:
Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1naxA01
A:257-445
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